1 HAMP#1
154-223 aa · 70 aa · 15.4% of protein
Raw token
HAMP:154:0.00000000000088:223:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HXZ52_RS00555
Histidine kinase, Classic
Clostridium cadaveris · GCF_013390975
ClassHKTypeClassicLength455 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013390975#HXZ52_RS00555Stable P2CS identifier used across views.
GenomeGCF_013390975Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length455 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage243 / 455 aa (53.4%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa455 aa
Domain-by-domain annotation3 items
2 HisKA#2
235-298 aa · 64 aa · 14.1% of protein
Raw token
HisKA:235:0.0000000000000184:298:64:643 HATPase_c#3
347-455 aa · 109 aa · 24.0% of protein
Raw token
HATPase_c:347:8.33e-19:455:115:109- Raw architecture: HAMP:154:0.00000000000088:223:70:69#HisKA:235:0.0000000000000184:298:64:64#HATPase_c:347:8.33e-19:455:115:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013390975::NZ_JACATM010000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span120683-122738Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHXZ52_00555RefSeq proteinWP_074846435.1
Context group ID
GCF_013390975::NZ_JACATM010000001.1::G00001Context members
HXZ52_RS00555HXZ52_RS00560
Partner locus tags
HXZ52_RS00555HXZ52_RS00560
Partner old locus tags
HXZ52_00555HXZ52_00560
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_074846435.1Primary protein accession used for annex mappings.
UniProt accessionA0A1I2PKQ4Primary UniProt accession resolved in the annex database.
UniProt IDA0A1I2PKQ4_9CLOTDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHXZ52_RS00555Primary locus identifier stored in the genes table.
Old locus tagHXZ52_00555Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACATM010000001.1Sequence record reported by the local genomic context database.
Genomic interval120 683-122 050 nt1 368 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span120 683-122 738 ntGCF_013390975::NZ_JACATM010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013390975::NZ_JACATM010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACATM010000001.1All displayed genes belong to this local TCS context.
Neighborhood span120 683-122 738 nt2 056 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
120 683 nt122 738 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HXZ52_RS00555GCF_013390975#HXZ52_RS00555
HKClassicCurrent focus
120 683-122 050 nt · Reverse (-)
HXZ52_RS00560GCF_013390975#HXZ52_RS00560
RROmpR
122 040-122 738 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_012844035#HF846_RS15315Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1903893
Simplified PFAM architecture for HKOC_1903893
PFAM domain coverage: 213 / 455 aa (46.8%)
1 aa455 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[178-223] | HisKA[235-298] | HATPase_c[347-449]
- Domain count: 3
- Matched identifier: HKOC_1903893
- Positioned domains: HAMP 178-223 ; HisKA 235-298 ; HATPase_c 347-449
Cluster members and taxonomy
Representative gene: GCF_012844035#HF846_RS15315
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 529 · GCF_013390975
AssemblyASM1339097v1 · Contighaploid
Genome composition3 614 608 bp · 31,5% GCClostridium cadaveris
Signal transduction countsGenes 78 · HK 38 · RR 39CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key