1 HisKA#1
235-301 aa · 67 aa · 14.7% of protein
Raw token
HisKA:235:0.000000000536:301:67:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HXZ52_RS09930
Histidine kinase, Classic
Clostridium cadaveris · GCF_013390975
ClassHKTypeClassicLength455 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013390975#HXZ52_RS09930Stable P2CS identifier used across views.
GenomeGCF_013390975Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length455 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 455 aa (38.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa455 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
348-454 aa · 107 aa · 23.5% of protein
Raw token
HATPase_c:348:1.48e-21:454:107:109- Raw architecture: HisKA:235:0.000000000536:301:67:64#HATPase_c:348:1.48e-21:454:107:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013390975::NZ_JACATM010000011.1::G00008
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span75472-77509Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHXZ52_09930RefSeq proteinWP_027637425.1
Context group ID
GCF_013390975::NZ_JACATM010000011.1::G00008Context members
HXZ52_RS09930HXZ52_RS09935
Partner locus tags
HXZ52_RS09930HXZ52_RS09935
Partner old locus tags
HXZ52_09930HXZ52_09935
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_027637425.1Primary protein accession used for annex mappings.
UniProt accessionA0A1I2K731Primary UniProt accession resolved in the annex database.
UniProt IDA0A1I2K731_9CLOTDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHXZ52_RS09930Primary locus identifier stored in the genes table.
Old locus tagHXZ52_09930Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACATM010000011.1Sequence record reported by the local genomic context database.
Genomic interval75 472-76 839 nt1 368 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span75 472-77 509 ntGCF_013390975::NZ_JACATM010000011.1::G00008
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013390975::NZ_JACATM010000011.1::G00008Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACATM010000011.1All displayed genes belong to this local TCS context.
Neighborhood span75 472-77 509 nt2 038 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
75 472 nt77 509 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HXZ52_RS09930GCF_013390975#HXZ52_RS09930
HKClassicCurrent focus
75 472-76 839 nt · Reverse (-)
HXZ52_RS09935GCF_013390975#HXZ52_RS09935
RROmpR
76 826-77 509 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424205#G605_RS0100780Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1900054
Simplified PFAM architecture for HKOC_1900054
PFAM domain coverage: 166 / 455 aa (36.5%)
1 aa455 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[237-295] | HATPase_c[348-454]
- Domain count: 2
- Matched identifier: HKOC_1900054
- Positioned domains: HisKA 237-295 ; HATPase_c 348-454
Cluster members and taxonomy
Representative gene: GCF_000424205#G605_RS0100780
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 529 · GCF_013390975
AssemblyASM1339097v1 · Contighaploid
Genome composition3 614 608 bp · 31,5% GCClostridium cadaveris
Signal transduction countsGenes 78 · HK 38 · RR 39CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key