1 HisKA#1
123-181 aa · 59 aa · 17.3% of protein
Raw token
HisKA:123:0.00000000000128:181:59:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HXZ52_RS09690
Histidine kinase, Classic
Clostridium cadaveris · GCF_013390975
ClassHKTypeClassicLength342 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013390975#HXZ52_RS09690Stable P2CS identifier used across views.
GenomeGCF_013390975Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length342 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage162 / 342 aa (47.4%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa342 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
237-339 aa · 103 aa · 30.1% of protein
Raw token
HATPase_c:237:2.63e-22:339:104:109- Raw architecture: HisKA:123:0.00000000000128:181:59:64#HATPase_c:237:2.63e-22:339:104:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013390975::NZ_JACATM010000011.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span26596-28343Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHXZ52_09690RefSeq proteinWP_099336110.1
Context group ID
GCF_013390975::NZ_JACATM010000011.1::G00006Context members
HXZ52_RS09685HXZ52_RS09690
Partner locus tags
HXZ52_RS09685HXZ52_RS09690
Partner old locus tags
HXZ52_09685HXZ52_09690
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_099336110.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHXZ52_RS09690Primary locus identifier stored in the genes table.
Old locus tagHXZ52_09690Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACATM010000011.1Sequence record reported by the local genomic context database.
Genomic interval27 315-28 343 nt1 029 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span26 596-28 343 ntGCF_013390975::NZ_JACATM010000011.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013390975::NZ_JACATM010000011.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACATM010000011.1All displayed genes belong to this local TCS context.
Neighborhood span26 596-28 343 nt1 748 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
26 596 nt28 343 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HXZ52_RS09685GCF_013390975#HXZ52_RS09685
RROmpR
26 596-27 312 nt · Forward (+)
HXZ52_RS09690GCF_013390975#HXZ52_RS09690
HKClassicCurrent focus
27 315-28 343 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013390975#HXZ52_RS09690The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2832476
Simplified PFAM architecture for HKOC_2832476
PFAM domain coverage: 161 / 342 aa (47.1%)
1 aa342 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[123-181] | HATPase_c[238-339]
- Domain count: 2
- Matched identifier: HKOC_2832476
- Positioned domains: HisKA 123-181 ; HATPase_c 238-339
Cluster members and taxonomy
Representative gene: GCF_013390975#HXZ52_RS09690
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 529 · GCF_013390975
AssemblyASM1339097v1 · Contighaploid
Genome composition3 614 608 bp · 31,5% GCClostridium cadaveris
Signal transduction countsGenes 78 · HK 38 · RR 39CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key