1 Response_reg#1
10-120 aa · 111 aa · 46.6% of protein
Raw token
Response_reg:10:7.01e-30:120:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HXZ52_RS09685
Response regulator OmpR family
Clostridium cadaveris · GCF_013390975
ClassRRTypeOmpRLength238 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013390975#HXZ52_RS09685Stable P2CS identifier used across views.
GenomeGCF_013390975Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 238 aa (79.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
157-233 aa · 77 aa · 32.4% of protein
Raw token
Trans_reg_C:157:4.29e-30:233:77:77- Raw architecture: Response_reg:10:7.01e-30:120:112:111#Trans_reg_C:157:4.29e-30:233:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013390975::NZ_JACATM010000011.1::G00006
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span26596-28343Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHXZ52_09685RefSeq proteinWP_099336111.1
Context group ID
GCF_013390975::NZ_JACATM010000011.1::G00006Context members
HXZ52_RS09685HXZ52_RS09690
Partner locus tags
HXZ52_RS09685HXZ52_RS09690
Partner old locus tags
HXZ52_09685HXZ52_09690
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_099336111.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHXZ52_RS09685Primary locus identifier stored in the genes table.
Old locus tagHXZ52_09685Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACATM010000011.1Sequence record reported by the local genomic context database.
Genomic interval26 596-27 312 nt717 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span26 596-28 343 ntGCF_013390975::NZ_JACATM010000011.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013390975::NZ_JACATM010000011.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACATM010000011.1All displayed genes belong to this local TCS context.
Neighborhood span26 596-28 343 nt1 748 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
26 596 nt28 343 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HXZ52_RS09685GCF_013390975#HXZ52_RS09685
RROmpRCurrent focus
26 596-27 312 nt · Forward (+)
HXZ52_RS09690GCF_013390975#HXZ52_RS09690
HKClassic
27 315-28 343 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013390975#HXZ52_RS09685The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0944540
Simplified PFAM architecture for RROC_0944540
PFAM domain coverage: 185 / 238 aa (77.7%)
1 aa238 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[10-119] | Trans_reg_C[159-233]
- Domain count: 2
- Matched identifier: RROC_0944540
- Positioned domains: Response_reg 10-119 ; Trans_reg_C 159-233
Cluster members and taxonomy
Representative gene: GCF_013390975#HXZ52_RS09685
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 529 · GCF_013390975
AssemblyASM1339097v1 · Contighaploid
Genome composition3 614 608 bp · 31,5% GCClostridium cadaveris
Signal transduction countsGenes 78 · HK 38 · RR 39CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key