1 Response_reg#1
4-116 aa · 113 aa · 42.8% of protein
Raw token
Response_reg:4:1.66e-26:116:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HXZ52_RS08875
Response regulator, unclassified
Clostridium cadaveris · GCF_013390975
ClassRRTypeunclassifiedLength264 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013390975#HXZ52_RS08875Stable P2CS identifier used across views.
GenomeGCF_013390975Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length264 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage193 / 264 aa (73.1%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa264 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
168-208 aa · 41 aa · 15.5% of protein
Raw token
HTH_AraC:168:0.00000139:208:41:423 HTH_AraC#3
219-257 aa · 39 aa · 14.8% of protein
Raw token
HTH_AraC:219:0.00000015:257:41:42- Raw architecture: Response_reg:4:1.66e-26:116:116:111#HTH_AraC:168:0.00000139:208:41:42#HTH_AraC:219:0.00000015:257:41:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013390975::NZ_JACATM010000009.1::G00042
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span73528-76075Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHXZ52_08875RefSeq proteinWP_178311550.1
Context group ID
GCF_013390975::NZ_JACATM010000009.1::G00042Context members
HXZ52_RS08870HXZ52_RS08875
Partner locus tags
HXZ52_RS08870HXZ52_RS08875
Partner old locus tags
HXZ52_08870HXZ52_08875
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_178311550.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHXZ52_RS08875Primary locus identifier stored in the genes table.
Old locus tagHXZ52_08875Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACATM010000009.1Sequence record reported by the local genomic context database.
Genomic interval75 281-76 075 nt795 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span73 528-76 075 ntGCF_013390975::NZ_JACATM010000009.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013390975::NZ_JACATM010000009.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACATM010000009.1All displayed genes belong to this local TCS context.
Neighborhood span73 528-76 075 nt2 548 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
73 528 nt76 075 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HXZ52_RS08870GCF_013390975#HXZ52_RS08870
HKClassic
73 528-75 276 nt · Forward (+)
HXZ52_RS08875GCF_013390975#HXZ52_RS08875
RRunclassifiedCurrent focus
75 281-76 075 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013390975#HXZ52_RS08875The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0636447
Simplified PFAM architecture for RROC_0636447
PFAM domain coverage: 190 / 264 aa (72.0%)
1 aa264 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[4-115] | HTH_18[181-258]
- Domain count: 2
- Matched identifier: RROC_0636447
- Positioned domains: Response_reg 4-115 ; HTH_18 181-258
Cluster members and taxonomy
Representative gene: GCF_013390975#HXZ52_RS08875
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 529 · GCF_013390975
AssemblyASM1339097v1 · Contighaploid
Genome composition3 614 608 bp · 31,5% GCClostridium cadaveris
Signal transduction countsGenes 78 · HK 38 · RR 39CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key