1 HAMP#1
295-357 aa · 63 aa · 10.8% of protein
Raw token
HAMP:295:7.11e-16:357:63:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HXZ52_RS08870
Histidine kinase, Classic
Clostridium cadaveris · GCF_013390975
ClassHKTypeClassicLength582 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013390975#HXZ52_RS08870Stable P2CS identifier used across views.
GenomeGCF_013390975Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HAMPHis_kinaseHATPase_c
Protein length582 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage245 / 582 aa (42.1%)Merged over positioned domains only.
Domain description1 HAMP,1 His_kinase,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa582 aa
Domain-by-domain annotation3 items
2 His_kinase#2
377-456 aa · 80 aa · 13.7% of protein
Raw token
His_kinase:377:3.37e-29:456:80:803 HATPase_c#3
476-577 aa · 102 aa · 17.5% of protein
Raw token
HATPase_c:476:0.00000000000165:577:106:109- Raw architecture: HAMP:295:7.11e-16:357:63:69#His_kinase:377:3.37e-29:456:80:80#HATPase_c:476:0.00000000000165:577:106:109
- Domain description: 1 HAMP,1 His_kinase,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013390975::NZ_JACATM010000009.1::G00042
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span73528-76075Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHXZ52_08870RefSeq proteinWP_051196259.1
Context group ID
GCF_013390975::NZ_JACATM010000009.1::G00042Context members
HXZ52_RS08870HXZ52_RS08875
Partner locus tags
HXZ52_RS08870HXZ52_RS08875
Partner old locus tags
HXZ52_08870HXZ52_08875
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_051196259.1Primary protein accession used for annex mappings.
UniProt accessionA0A1I2KLE6Primary UniProt accession resolved in the annex database.
UniProt IDA0A1I2KLE6_9CLOTDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHXZ52_RS08870Primary locus identifier stored in the genes table.
Old locus tagHXZ52_08870Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACATM010000009.1Sequence record reported by the local genomic context database.
Genomic interval73 528-75 276 nt1 749 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span73 528-76 075 ntGCF_013390975::NZ_JACATM010000009.1::G00042
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013390975::NZ_JACATM010000009.1::G00042Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACATM010000009.1All displayed genes belong to this local TCS context.
Neighborhood span73 528-76 075 nt2 548 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
73 528 nt76 075 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HXZ52_RS08870GCF_013390975#HXZ52_RS08870
HKClassicCurrent focus
73 528-75 276 nt · Forward (+)
HXZ52_RS08875GCF_013390975#HXZ52_RS08875
RRunclassified
75 281-76 075 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424205#G605_RS19125Use this link to inspect the representative gene detail.
PFAM architectureHAMP + His_kinase + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1152574
Simplified PFAM architecture for HKOC_1152574
PFAM domain coverage: 230 / 582 aa (39.5%)
1 aa582 aa
HAMPHis_kinaseHATPase_c
- Simplified architecture: HAMP + His_kinase + HATPase_c
- Raw architecture: HAMP[310-357] | His_kinase[377-456] | HATPase_c[476-577]
- Domain count: 3
- Matched identifier: HKOC_1152574
- Positioned domains: HAMP 310-357 ; His_kinase 377-456 ; HATPase_c 476-577
Cluster members and taxonomy
Representative gene: GCF_000424205#G605_RS19125
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 529 · GCF_013390975
AssemblyASM1339097v1 · Contighaploid
Genome composition3 614 608 bp · 31,5% GCClostridium cadaveris
Signal transduction countsGenes 78 · HK 38 · RR 39CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key