1 HisKA#1
843-906 aa · 64 aa · 6.0% of protein
Raw token
HisKA:843:0.00000000000191:906:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HXZ52_RS07680
Histidine kinase, Classic
Clostridium cadaveris · GCF_013390975
ClassHKTypeClassicLength1063 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013390975#HXZ52_RS07680Stable P2CS identifier used across views.
GenomeGCF_013390975Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length1063 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage173 / 1063 aa (16.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1063 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
953-1061 aa · 109 aa · 10.3% of protein
Raw token
HATPase_c:953:2.56e-29:1061:109:109- Raw architecture: HisKA:843:0.00000000000191:906:64:64#HATPase_c:953:2.56e-29:1061:109:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013390975::NZ_JACATM010000007.1::G00038
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span86823-90014Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHXZ52_07680RefSeq proteinWP_178311431.1
Context group ID
GCF_013390975::NZ_JACATM010000007.1::G00038Context members
HXZ52_RS07680
Partner locus tags
HXZ52_RS07680
Partner old locus tags
HXZ52_07680
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_178311431.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHXZ52_RS07680Primary locus identifier stored in the genes table.
Old locus tagHXZ52_07680Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACATM010000007.1Sequence record reported by the local genomic context database.
Genomic interval86 823-90 014 nt3 192 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span86 823-90 014 ntGCF_013390975::NZ_JACATM010000007.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013390975::NZ_JACATM010000007.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACATM010000007.1All displayed genes belong to this local TCS context.
Neighborhood span86 823-90 014 nt3 192 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
86 823 nt90 014 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HXZ52_RS07680GCF_013390975#HXZ52_RS07680
HKClassicCurrent focus
86 823-90 014 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013390975#HXZ52_RS07680The current gene is the representative for this cluster.
PFAM architectureReg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c10 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0251012
Simplified PFAM architecture for HKOC_0251012
PFAM domain coverage: 392 / 1063 aa (36.9%)
1 aa1063 aa
Reg_propReg_propReg_propReg_propReg_propReg_propReg_propY_Y_YHisKAHATPase_c
- Simplified architecture: Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Reg_prop + Y_Y_Y + HisKA + HATPase_c
- Raw architecture: Reg_prop[43-66] | Reg_prop[89-110] | Reg_prop[178-200] | Reg_prop[224-244] | Reg_prop[273-294] | Reg_prop[365-386] | Reg_prop[548-570] | Y_Y_Y[713-773] | HisKA[843-906] | HATPase_c[953-1062]
- Domain count: 10
- Matched identifier: HKOC_0251012
- Positioned domains: Reg_prop 43-66 ; Reg_prop 89-110 ; Reg_prop 178-200 ; Reg_prop 224-244 ; Reg_prop 273-294 ; Reg_prop 365-386 ; Reg_prop 548-570 ; Y_Y_Y 713-773 ; HisKA 843-906 ; HATPase_c 953-1062
Cluster members and taxonomy
Representative gene: GCF_013390975#HXZ52_RS07680
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 529 · GCF_013390975
AssemblyASM1339097v1 · Contighaploid
Genome composition3 614 608 bp · 31,5% GCClostridium cadaveris
Signal transduction countsGenes 78 · HK 38 · RR 39CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key