1 Response_reg#1
3-103 aa · 101 aa · 48.8% of protein
Raw token
Response_reg:3:2.86e-29:103:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HXZ52_RS07355
Response regulator NarL family
Clostridium cadaveris · GCF_013390975
ClassRRTypeNarLLength207 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013390975#HXZ52_RS07355Stable P2CS identifier used across views.
GenomeGCF_013390975Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regHTH_LUXR
Protein length207 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage154 / 207 aa (74.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 HTH_LUXRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa207 aa
Domain-by-domain annotation2 items
2 HTH_LUXR#2
149-201 aa · 53 aa · 25.6% of protein
Raw token
HTH_LUXR:149:4.99e-19:201:53:58- Raw architecture: Response_reg:3:2.86e-29:103:101:111#HTH_LUXR:149:4.99e-19:201:53:58
- Domain description: 1 Response_reg,1 HTH_LUXR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013390975::NZ_JACATM010000007.1::G00037
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span17783-19486Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHXZ52_07355RefSeq proteinWP_178311404.1
Context group ID
GCF_013390975::NZ_JACATM010000007.1::G00037Context members
HXZ52_RS07355HXZ52_RS07360
Partner locus tags
HXZ52_RS07355HXZ52_RS07360
Partner old locus tags
HXZ52_07355HXZ52_07360
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_178311404.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHXZ52_RS07355Primary locus identifier stored in the genes table.
Old locus tagHXZ52_07355Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACATM010000007.1Sequence record reported by the local genomic context database.
Genomic interval17 783-18 406 nt624 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span17 783-19 486 ntGCF_013390975::NZ_JACATM010000007.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013390975::NZ_JACATM010000007.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACATM010000007.1All displayed genes belong to this local TCS context.
Neighborhood span17 783-19 486 nt1 704 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
17 783 nt19 486 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HXZ52_RS07355GCF_013390975#HXZ52_RS07355
RRNarLCurrent focus
17 783-18 406 nt · Reverse (-)
HXZ52_RS07360GCF_013390975#HXZ52_RS07360
HKClassic
18 428-19 486 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013390975#HXZ52_RS07355The current gene is the representative for this cluster.
PFAM architectureResponse_reg + GerE2 domains in the representative PFAM annotation.
PFAM architecture for RROC_2074833
Simplified PFAM architecture for RROC_2074833
PFAM domain coverage: 155 / 207 aa (74.9%)
1 aa207 aa
Response_regGerE
- Simplified architecture: Response_reg + GerE
- Raw architecture: Response_reg[3-104] | GerE[149-201]
- Domain count: 2
- Matched identifier: RROC_2074833
- Positioned domains: Response_reg 3-104 ; GerE 149-201
Cluster members and taxonomy
Representative gene: GCF_013390975#HXZ52_RS07355
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 529 · GCF_013390975
AssemblyASM1339097v1 · Contighaploid
Genome composition3 614 608 bp · 31,5% GCClostridium cadaveris
Signal transduction countsGenes 78 · HK 38 · RR 39CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key