1 PAS#1
112-215 aa · 104 aa · 21.5% of protein
Raw token
PAS:112:0.000000000000592:215:112:113P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HXZ52_RS06530
Histidine kinase, Classic
Clostridium cadaveris · GCF_013390975
ClassHKTypeClassicLength483 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013390975#HXZ52_RS06530Stable P2CS identifier used across views.
GenomeGCF_013390975Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
PASHisKAHATPase_c
Protein length483 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage287 / 483 aa (59.4%)Merged over positioned domains only.
Domain description1 PAS,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa483 aa
Domain-by-domain annotation3 items
2 HisKA#2
231-301 aa · 71 aa · 14.7% of protein
Raw token
HisKA:231:0.0000000000000866:301:71:643 HATPase_c#3
348-459 aa · 112 aa · 23.2% of protein
Raw token
HATPase_c:348:1.44e-31:459:112:109- Raw architecture: PAS:112:0.000000000000592:215:112:113#HisKA:231:0.0000000000000866:301:71:64#HATPase_c:348:1.44e-31:459:112:109
- Domain description: 1 PAS,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013390975::NZ_JACATM010000006.1::G00036
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span41426-42877Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHXZ52_06530RefSeq proteinWP_178311338.1
Context group ID
GCF_013390975::NZ_JACATM010000006.1::G00036Context members
HXZ52_RS06530
Partner locus tags
HXZ52_RS06530
Partner old locus tags
HXZ52_06530
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_178311338.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHXZ52_RS06530Primary locus identifier stored in the genes table.
Old locus tagHXZ52_06530Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACATM010000006.1Sequence record reported by the local genomic context database.
Genomic interval41 426-42 877 nt1 452 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span41 426-42 877 ntGCF_013390975::NZ_JACATM010000006.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013390975::NZ_JACATM010000006.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACATM010000006.1All displayed genes belong to this local TCS context.
Neighborhood span41 426-42 877 nt1 452 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
41 426 nt42 877 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HXZ52_RS06530GCF_013390975#HXZ52_RS06530
HKClassicCurrent focus
41 426-42 877 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013390975#HXZ52_RS06530The current gene is the representative for this cluster.
PFAM architecturePAS + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1596932
Simplified PFAM architecture for HKOC_1596932
PFAM domain coverage: 286 / 483 aa (59.2%)
1 aa483 aa
PASHisKAHATPase_c
- Simplified architecture: PAS + HisKA + HATPase_c
- Raw architecture: PAS[111-215] | HisKA[232-301] | HATPase_c[348-458]
- Domain count: 3
- Matched identifier: HKOC_1596932
- Positioned domains: PAS 111-215 ; HisKA 232-301 ; HATPase_c 348-458
Cluster members and taxonomy
Representative gene: GCF_013390975#HXZ52_RS06530
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 529 · GCF_013390975
AssemblyASM1339097v1 · Contighaploid
Genome composition3 614 608 bp · 31,5% GCClostridium cadaveris
Signal transduction countsGenes 78 · HK 38 · RR 39CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key