1 PAS_9#1
188-284 aa · 97 aa · 14.2% of protein
Raw token
PAS_9:188:0.0000413:284:97:102P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HXZ52_RS04670
Histidine kinase, Classic
Clostridium cadaveris · GCF_013390975
ClassHKTypeClassicLength683 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013390975#HXZ52_RS04670Stable P2CS identifier used across views.
GenomeGCF_013390975Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
PAS_9HisKAHATPase_c
Protein length683 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage273 / 683 aa (40.0%)Merged over positioned domains only.
Domain description1 PAS_9,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa683 aa
Domain-by-domain annotation3 items
2 HisKA#2
431-498 aa · 68 aa · 10.0% of protein
Raw token
HisKA:431:0.000000000000103:498:68:643 HATPase_c#3
545-652 aa · 108 aa · 15.8% of protein
Raw token
HATPase_c:545:1.82e-29:652:108:109- Raw architecture: PAS_9:188:0.0000413:284:97:102#HisKA:431:0.000000000000103:498:68:64#HATPase_c:545:1.82e-29:652:108:109
- Domain description: 1 PAS_9,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013390975::NZ_JACATM010000004.1::G00024
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span81130-83181Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHXZ52_04670RefSeq proteinWP_051196184.1
Context group ID
GCF_013390975::NZ_JACATM010000004.1::G00024Context members
HXZ52_RS04670
Partner locus tags
HXZ52_RS04670
Partner old locus tags
HXZ52_04670
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_051196184.1Primary protein accession used for annex mappings.
UniProt accessionA0A1I2JMJ9Primary UniProt accession resolved in the annex database.
UniProt IDA0A1I2JMJ9_9CLOTDisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHXZ52_RS04670Primary locus identifier stored in the genes table.
Old locus tagHXZ52_04670Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACATM010000004.1Sequence record reported by the local genomic context database.
Genomic interval81 130-83 181 nt2 052 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span81 130-83 181 ntGCF_013390975::NZ_JACATM010000004.1::G00024
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013390975::NZ_JACATM010000004.1::G00024Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACATM010000004.1All displayed genes belong to this local TCS context.
Neighborhood span81 130-83 181 nt2 052 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
81 130 nt83 181 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
HXZ52_RS04670GCF_013390975#HXZ52_RS04670
HKClassicCurrent focus
81 130-83 181 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000424205#G605_RS0103575Use this link to inspect the representative gene detail.
PFAM architecturePAS_9 + PAS_9 + PAS_9 + HisKA + HATPase_c5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0808437
Simplified PFAM architecture for HKOC_0808437
PFAM domain coverage: 465 / 683 aa (68.1%)
1 aa683 aa
PAS_9PAS_9PAS_9HisKAHATPase_c
- Simplified architecture: PAS_9 + PAS_9 + PAS_9 + HisKA + HATPase_c
- Raw architecture: PAS_9[18-122] | PAS_9[176-284] | PAS_9[342-416] | HisKA[431-498] | HATPase_c[545-652]
- Domain count: 5
- Matched identifier: HKOC_0808437
- Positioned domains: PAS_9 18-122 ; PAS_9 176-284 ; PAS_9 342-416 ; HisKA 431-498 ; HATPase_c 545-652
Cluster members and taxonomy
Representative gene: GCF_000424205#G605_RS0103575
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 529 · GCF_013390975
AssemblyASM1339097v1 · Contighaploid
Genome composition3 614 608 bp · 31,5% GCClostridium cadaveris
Signal transduction countsGenes 78 · HK 38 · RR 39CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key