1 Response_reg#1
7-116 aa · 110 aa · 47.4% of protein
Raw token
Response_reg:7:8.84e-37:116:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
HXZ52_RS00560
Response regulator OmpR family
Clostridium cadaveris · GCF_013390975
ClassRRTypeOmpRLength232 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013390975#HXZ52_RS00560Stable P2CS identifier used across views.
GenomeGCF_013390975Bacteria; Bacillati; Bacillota; Clostridia; Eubacteriales; Clostridiaceae; Clostridium
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length232 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage184 / 232 aa (79.3%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa232 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
157-230 aa · 74 aa · 31.9% of protein
Raw token
Trans_reg_C:157:4.45e-32:230:74:77- Raw architecture: Response_reg:7:8.84e-37:116:111:111#Trans_reg_C:157:4.45e-32:230:74:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013390975::NZ_JACATM010000001.1::G00001
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span120683-122738Genomic interval covered by the local TCS group.
Identifiers
Old locus tagHXZ52_00560RefSeq proteinWP_074846433.1
Context group ID
GCF_013390975::NZ_JACATM010000001.1::G00001Context members
HXZ52_RS00555HXZ52_RS00560
Partner locus tags
HXZ52_RS00555HXZ52_RS00560
Partner old locus tags
HXZ52_00555HXZ52_00560
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_074846433.1Primary protein accession used for annex mappings.
UniProt accessionA0A1I2PMG7Primary UniProt accession resolved in the annex database.
UniProt IDA0A1I2PMG7_9CLOTDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagHXZ52_RS00560Primary locus identifier stored in the genes table.
Old locus tagHXZ52_00560Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JACATM010000001.1Sequence record reported by the local genomic context database.
Genomic interval122 040-122 738 nt699 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span120 683-122 738 ntGCF_013390975::NZ_JACATM010000001.1::G00001
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013390975::NZ_JACATM010000001.1::G00001Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JACATM010000001.1All displayed genes belong to this local TCS context.
Neighborhood span120 683-122 738 nt2 056 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
120 683 nt122 738 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
HXZ52_RS00555GCF_013390975#HXZ52_RS00555
HKClassic
120 683-122 050 nt · Reverse (-)
HXZ52_RS00560GCF_013390975#HXZ52_RS00560
RROmpRCurrent focus
122 040-122 738 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_012844035#HF846_RS15320Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1133901
Simplified PFAM architecture for RROC_1133901
PFAM domain coverage: 183 / 232 aa (78.9%)
1 aa232 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[7-116] | Trans_reg_C[157-229]
- Domain count: 2
- Matched identifier: RROC_1133901
- Positioned domains: Response_reg 7-116 ; Trans_reg_C 157-229
Cluster members and taxonomy
Representative gene: GCF_012844035#HF846_RS15320
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 529 · GCF_013390975
AssemblyASM1339097v1 · Contighaploid
Genome composition3 614 608 bp · 31,5% GCClostridium cadaveris
Signal transduction countsGenes 78 · HK 38 · RR 39CheA 1 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderEubacterialesFamilyClostridiaceaeGenusClostridium
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Eubacteriales6Clostridiaceae7Clostridium
Related genes
Preview from the same derived genome key