1 Response_reg#1
6-120 aa · 115 aa · 43.1% of protein
Raw token
Response_reg:6:2.9e-29:120:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
GI596_RS10300
Response regulator Spo0A family
Bacillus paranthracis · GCF_013357905
ClassRRTypeSpo0ALength267 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013357905#GI596_RS10300Stable P2CS identifier used across views.
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length267 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage219 / 267 aa (82.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa267 aa
Domain-by-domain annotation2 items
2 Spo0A_C#2
154-257 aa · 104 aa · 39.0% of protein
Raw token
Spo0A_C:154:6.74e-66:257:104:104- Raw architecture: Response_reg:6:2.9e-29:120:115:111#Spo0A_C:154:6.74e-66:257:104:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013357905::NZ_WQMW01000005.1::G00019
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span252046-252849Genomic interval covered by the local TCS group.
Identifiers
Old locus tagGI596_10165RefSeq proteinWP_175251509.1
Context group ID
GCF_013357905::NZ_WQMW01000005.1::G00019Context members
GI596_RS10300
Partner locus tags
GI596_RS10300
Partner old locus tags
GI596_10165
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_175251509.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagGI596_RS10300Primary locus identifier stored in the genes table.
Old locus tagGI596_10165Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_WQMW01000005.1Sequence record reported by the local genomic context database.
Genomic interval252 046-252 849 nt804 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span252 046-252 849 ntGCF_013357905::NZ_WQMW01000005.1::G00019
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013357905::NZ_WQMW01000005.1::G00019Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_WQMW01000005.1All displayed genes belong to this local TCS context.
Neighborhood span252 046-252 849 nt804 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
252 046 nt252 849 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
GI596_RS10300GCF_013357905#GI596_RS10300
RRSpo0ACurrent focus
252 046-252 849 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013357905#GI596_RS10300The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0624159
Simplified PFAM architecture for RROC_0624159
PFAM domain coverage: 219 / 267 aa (82.0%)
1 aa267 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[6-120] | Spo0A_C[154-257]
- Domain count: 2
- Matched identifier: RROC_0624159
- Positioned domains: Response_reg 6-120 ; Spo0A_C 154-257
Cluster members and taxonomy
Representative gene: GCF_013357905#GI596_RS10300
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 2 026 186 · GCF_013357905
AssemblyASM1335790v1 · Scaffoldhaploid
Genome composition5 681 902 bp · 35,0% GCBacillus paranthracis
Signal transduction countsGenes 91 · HK 46 · RR 45CheA 1 · PP 0
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassBacilliOrderBacillalesFamilyBacillaceaeGenusBacillus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Bacilli5Bacillales6Bacillaceae7Bacillus
Related genes
Preview from the same derived genome key