1 Response_reg#1
5-105 aa · 101 aa · 19.1% of protein
Raw token
Response_reg:5:2.32e-30:105:101:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5B08_RS00835
Response regulator, unclassified
Blautia massiliensis (ex Durand et al. 2017) · GCF_013305055
ClassRRTypeunclassifiedLength528 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013305055#G5B08_RS00835Stable P2CS identifier used across views.
GenomeGCF_013305055Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length528 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage180 / 528 aa (34.1%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa528 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
432-473 aa · 42 aa · 8.0% of protein
Raw token
HTH_AraC:432:0.00000163:473:42:423 HTH_AraC#3
487-523 aa · 37 aa · 7.0% of protein
Raw token
HTH_AraC:487:0.00000000249:523:37:42- Raw architecture: Response_reg:5:2.32e-30:105:101:111#HTH_AraC:432:0.00000163:473:42:42#HTH_AraC:487:0.00000000249:523:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013305055::NZ_JAAIUS010000001.1::G00011
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span168486-171811Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5B08_00840RefSeq proteinWP_173733935.1
Context group ID
GCF_013305055::NZ_JAAIUS010000001.1::G00011Context members
G5B08_RS00835G5B08_RS00840
Partner locus tags
G5B08_RS00835G5B08_RS00840
Partner old locus tags
G5B08_00840G5B08_00845
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173733935.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5B08_RS00835Primary locus identifier stored in the genes table.
Old locus tagG5B08_00840Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIUS010000001.1Sequence record reported by the local genomic context database.
Genomic interval168 486-170 072 nt1 587 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span168 486-171 811 ntGCF_013305055::NZ_JAAIUS010000001.1::G00011
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013305055::NZ_JAAIUS010000001.1::G00011Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIUS010000001.1All displayed genes belong to this local TCS context.
Neighborhood span168 486-171 811 nt3 326 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
168 486 nt171 811 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G5B08_RS00835GCF_013305055#G5B08_RS00835
RRunclassifiedCurrent focus
168 486-170 072 nt · Reverse (-)
G5B08_RS00840GCF_013305055#G5B08_RS00840
HKClassic
170 072-171 811 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013305055#G5B08_RS00835The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0114983
Simplified PFAM architecture for RROC_0114983
PFAM domain coverage: 189 / 528 aa (35.8%)
1 aa528 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-115] | HTH_18[446-523]
- Domain count: 2
- Matched identifier: RROC_0114983
- Positioned domains: Response_reg 5-115 ; HTH_18 446-523
Cluster members and taxonomy
Representative gene: GCF_013305055#G5B08_RS00835
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 737 424 · GCF_013305055
AssemblyASM1330505v1 · Contighaploid
Genome composition3 438 307 bp · 44,0% GCBlautia massiliensis (ex Durand et al. 2017)
Signal transduction countsGenes 82 · HK 38 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key