1 sCache_like#1
30-133 aa · 104 aa · 23.4% of protein
Raw token
sCache_like:30:0.000000031:133:112:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5B28_RS04630
Histidine kinase, Classic
Blautia faecis · GCF_013304475
ClassHKTypeClassicLength445 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013304475#G5B28_RS04630Stable P2CS identifier used across views.
GenomeGCF_013304475Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
sCache_likeHisKAHATPase_c
Protein length445 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage280 / 445 aa (62.9%)Merged over positioned domains only.
Domain description1 sCache_like,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa445 aa
Domain-by-domain annotation3 items
2 HisKA#2
226-291 aa · 66 aa · 14.8% of protein
Raw token
HisKA:226:5.07e-17:291:66:643 HATPase_c#3
336-445 aa · 110 aa · 24.7% of protein
Raw token
HATPase_c:336:1.13e-26:445:110:109- Raw architecture: sCache_like:30:0.000000031:133:112:114#HisKA:226:5.07e-17:291:66:64#HATPase_c:336:1.13e-26:445:110:109
- Domain description: 1 sCache_like,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013304475::NZ_JAAITV010000006.1::G00074
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span113273-115293Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5B28_04620RefSeq proteinWP_173735102.1
Context group ID
GCF_013304475::NZ_JAAITV010000006.1::G00074Context members
G5B28_RS04630G5B28_RS04635
Partner locus tags
G5B28_RS04630G5B28_RS04635
Partner old locus tags
G5B28_04620G5B28_04625
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173735102.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5B28_RS04630Primary locus identifier stored in the genes table.
Old locus tagG5B28_04620Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAITV010000006.1Sequence record reported by the local genomic context database.
Genomic interval113 273-114 610 nt1 338 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span113 273-115 293 ntGCF_013304475::NZ_JAAITV010000006.1::G00074
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013304475::NZ_JAAITV010000006.1::G00074Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAITV010000006.1All displayed genes belong to this local TCS context.
Neighborhood span113 273-115 293 nt2 021 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
113 273 nt115 293 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G5B28_RS04630GCF_013304475#G5B28_RS04630
HKClassicCurrent focus
113 273-114 610 nt · Reverse (-)
G5B28_RS04635GCF_013304475#G5B28_RS04635
RROmpR
114 607-115 293 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013304475#G5B28_RS04630The current gene is the representative for this cluster.
PFAM architecturesCache_like + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2025546
Simplified PFAM architecture for HKOC_2025546
PFAM domain coverage: 254 / 445 aa (57.1%)
1 aa445 aa
sCache_likeHisKAHATPase_c
- Simplified architecture: sCache_like + HisKA + HATPase_c
- Raw architecture: sCache_like[49-131] | HisKA[226-290] | HATPase_c[339-444]
- Domain count: 3
- Matched identifier: HKOC_2025546
- Positioned domains: sCache_like 49-131 ; HisKA 226-290 ; HATPase_c 339-444
Cluster members and taxonomy
Representative gene: GCF_013304475#G5B28_RS04630
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_013304475
AssemblyASM1330447v1 · Contighaploid
Genome composition4 865 890 bp · 42,5% GCBlautia faecis
Signal transduction countsGenes 134 · HK 69 · RR 64CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key