1 Response_reg#1
4-113 aa · 110 aa · 48.0% of protein
Raw token
Response_reg:4:3.03e-36:113:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5A04_RS04260
Response regulator OmpR family
Agathobacter rectalis · GCF_013303785
ClassRRTypeOmpRLength229 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013303785#G5A04_RS04260Stable P2CS identifier used across views.
GenomeGCF_013303785Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Agathobacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length229 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage187 / 229 aa (81.7%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa229 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
151-227 aa · 77 aa · 33.6% of protein
Raw token
Trans_reg_C:151:1.8e-32:227:77:77- Raw architecture: Response_reg:4:3.03e-36:113:111:111#Trans_reg_C:151:1.8e-32:227:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013303785::NZ_JAAISB010000005.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span11774-14086Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5A04_04290RefSeq proteinWP_012741372.1
Context group ID
GCF_013303785::NZ_JAAISB010000005.1::G00040Context members
G5A04_RS04260G5A04_RS04265
Partner locus tags
G5A04_RS04260G5A04_RS04265
Partner old locus tags
G5A04_04290G5A04_04295
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_012741372.1Primary protein accession used for annex mappings.
UniProt accessionC4ZBW5Primary UniProt accession resolved in the annex database.
UniProt IDC4ZBW5_AGARVDisplay identifier provided by UniProt.
GO / PubMed5 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5A04_RS04260Primary locus identifier stored in the genes table.
Old locus tagG5A04_04290Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAISB010000005.1Sequence record reported by the local genomic context database.
Genomic interval11 774-12 463 nt690 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span11 774-14 086 ntGCF_013303785::NZ_JAAISB010000005.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013303785::NZ_JAAISB010000005.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAISB010000005.1All displayed genes belong to this local TCS context.
Neighborhood span11 774-14 086 nt2 313 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 774 nt14 086 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G5A04_RS04260GCF_013303785#G5A04_RS04260
RROmpRCurrent focus
11 774-12 463 nt · Forward (+)
G5A04_RS04265GCF_013303785#G5A04_RS04265
HKClassic
12 587-14 086 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000020605#EUBREC_RS02110Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1246429
Simplified PFAM architecture for RROC_1246429
PFAM domain coverage: 187 / 229 aa (81.7%)
1 aa229 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[151-227]
- Domain count: 2
- Matched identifier: RROC_1246429
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 151-227 ; Trans_reg_C 151-227
Cluster members and taxonomy
Representative gene: GCF_000020605#EUBREC_RS02110
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 39 491 · GCF_013303785
AssemblyASM1330378v1 · Contighaploid
Genome composition3 584 911 bp · 41,0% GCAgathobacter rectalis
Signal transduction countsGenes 88 · HK 36 · RR 49CheA 1 · PP 3
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAgathobacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Agathobacter
Related genes
Preview from the same derived genome key