1 sCache_like#1
34-132 aa · 99 aa · 21.9% of protein
Raw token
sCache_like:34:0.0000000639:132:105:114P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4942_RS09765
Histidine kinase, Classic
Anaerostipes hadrus · GCF_013302845
ClassHKTypeClassicLength452 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013302845#G4942_RS09765Stable P2CS identifier used across views.
GenomeGCF_013302845Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
sCache_likeHisKAHATPase_c
Protein length452 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage279 / 452 aa (61.7%)Merged over positioned domains only.
Domain description1 sCache_like,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa452 aa
Domain-by-domain annotation3 items
2 HisKA#2
226-292 aa · 67 aa · 14.8% of protein
Raw token
HisKA:226:6.47e-17:292:67:643 HATPase_c#3
336-448 aa · 113 aa · 25.0% of protein
Raw token
HATPase_c:336:1.34e-29:448:113:109- Raw architecture: sCache_like:34:0.0000000639:132:105:114#HisKA:226:6.47e-17:292:67:64#HATPase_c:336:1.34e-29:448:113:109
- Domain description: 1 sCache_like,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013302845::NZ_JAAIQT010000024.1::G00015
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span172-2207Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4942_09755RefSeq proteinWP_173751166.1
Context group ID
GCF_013302845::NZ_JAAIQT010000024.1::G00015Context members
G4942_RS09765G4942_RS09770
Partner locus tags
G4942_RS09765G4942_RS09770
Partner old locus tags
G4942_09755G4942_09760
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173751166.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4942_RS09765Primary locus identifier stored in the genes table.
Old locus tagG4942_09755Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIQT010000024.1Sequence record reported by the local genomic context database.
Genomic interval172-1 530 nt1 359 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span172-2 207 ntGCF_013302845::NZ_JAAIQT010000024.1::G00015
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013302845::NZ_JAAIQT010000024.1::G00015Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIQT010000024.1All displayed genes belong to this local TCS context.
Neighborhood span172-2 207 nt2 036 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
172 nt2 207 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4942_RS09765GCF_013302845#G4942_RS09765
HKClassicCurrent focus
172-1 530 nt · Reverse (-)
G4942_RS09770GCF_013302845#G4942_RS09770
RROmpR
1 527-2 207 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302845#G4942_RS09765The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1941985
Simplified PFAM architecture for HKOC_1941985
PFAM domain coverage: 175 / 452 aa (38.7%)
1 aa452 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[226-291] | HATPase_c[339-447]
- Domain count: 2
- Matched identifier: HKOC_1941985
- Positioned domains: HisKA 226-291 ; HATPase_c 339-447
Cluster members and taxonomy
Representative gene: GCF_013302845#G4942_RS09765
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_013302845
AssemblyASM1330284v1 · Contighaploid
Genome composition3 275 116 bp · 36,5% GCAnaerostipes hadrus
Signal transduction countsGenes 65 · HK 32 · RR 32CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key