1 Response_reg#1
3-109 aa · 107 aa · 45.0% of protein
Raw token
Response_reg:3:0.0000000000000811:109:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4942_RS03610
Response regulator LytTR family
Anaerostipes hadrus · GCF_013302845
ClassRRTypeLytTRLength238 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013302845#G4942_RS03610Stable P2CS identifier used across views.
GenomeGCF_013302845Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length238 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage199 / 238 aa (83.6%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa238 aa
Domain-by-domain annotation2 items
2 LytTR#2
138-229 aa · 92 aa · 38.7% of protein
Raw token
LytTR:138:6.29e-19:229:98:98- Raw architecture: Response_reg:3:0.0000000000000811:109:111:111#LytTR:138:6.29e-19:229:98:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013302845::NZ_JAAIQT010000006.1::G00033
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span2864-3580Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4942_03580RefSeq proteinWP_008392036.1
Context group ID
GCF_013302845::NZ_JAAIQT010000006.1::G00033Context members
G4942_RS03610
Partner locus tags
G4942_RS03610
Partner old locus tags
G4942_03580
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008392036.1Primary protein accession used for annex mappings.
UniProt accessionD4MZG6Primary UniProt accession resolved in the annex database.
UniProt IDD4MZG6_ANAHADisplay identifier provided by UniProt.
GO / PubMed2 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4942_RS03610Primary locus identifier stored in the genes table.
Old locus tagG4942_03580Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIQT010000006.1Sequence record reported by the local genomic context database.
Genomic interval2 864-3 580 nt717 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span2 864-3 580 ntGCF_013302845::NZ_JAAIQT010000006.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013302845::NZ_JAAIQT010000006.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIQT010000006.1All displayed genes belong to this local TCS context.
Neighborhood span2 864-3 580 nt717 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
2 864 nt3 580 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4942_RS03610GCF_013302845#G4942_RS03610
RRLytTRCurrent focus
2 864-3 580 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000210695#CL2_RS04890Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0932873
Simplified PFAM architecture for RROC_0932873
PFAM domain coverage: 203 / 238 aa (85.3%)
1 aa238 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[3-115] | LytTR[139-228]
- Domain count: 2
- Matched identifier: RROC_0932873
- Positioned domains: Response_reg 3-115 ; Response_reg 3-115 ; LytTR 139-228 ; LytTR 139-228
Cluster members and taxonomy
Representative gene: GCF_000210695#CL2_RS04890
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_013302845
AssemblyASM1330284v1 · Contighaploid
Genome composition3 275 116 bp · 36,5% GCAnaerostipes hadrus
Signal transduction countsGenes 65 · HK 32 · RR 32CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key