1 Response_reg#1
6-116 aa · 111 aa · 49.1% of protein
Raw token
Response_reg:6:9.33e-31:116:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4942_RS04770
Response regulator OmpR family
Anaerostipes hadrus · GCF_013302845
ClassRRTypeOmpRLength226 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013302845#G4942_RS04770Stable P2CS identifier used across views.
GenomeGCF_013302845Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length226 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 226 aa (81.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa226 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
148-221 aa · 74 aa · 32.7% of protein
Raw token
Trans_reg_C:148:9.89e-34:221:77:77- Raw architecture: Response_reg:6:9.33e-31:116:112:111#Trans_reg_C:148:9.89e-34:221:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013302845::NZ_JAAIQT010000008.1::G00036
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span22723-24884Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4942_04750RefSeq proteinWP_173750963.1
Context group ID
GCF_013302845::NZ_JAAIQT010000008.1::G00036Context members
G4942_RS04770G4942_RS04775
Partner locus tags
G4942_RS04770G4942_RS04775
Partner old locus tags
G4942_04750G4942_04760
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173750963.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4942_RS04770Primary locus identifier stored in the genes table.
Old locus tagG4942_04750Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIQT010000008.1Sequence record reported by the local genomic context database.
Genomic interval22 723-23 403 nt681 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span22 723-24 884 ntGCF_013302845::NZ_JAAIQT010000008.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013302845::NZ_JAAIQT010000008.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIQT010000008.1All displayed genes belong to this local TCS context.
Neighborhood span22 723-24 884 nt2 162 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
22 723 nt24 884 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4942_RS04770GCF_013302845#G4942_RS04770
RROmpRCurrent focus
22 723-23 403 nt · Forward (+)
G4942_RS04775GCF_013302845#G4942_RS04775
HKClassic
23 400-24 884 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302845#G4942_RS04770The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1428110
Simplified PFAM architecture for RROC_1428110
PFAM domain coverage: 184 / 226 aa (81.4%)
1 aa226 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[148-221]
- Domain count: 2
- Matched identifier: RROC_1428110
- Positioned domains: Response_reg 6-115 ; Trans_reg_C 148-221
Cluster members and taxonomy
Representative gene: GCF_013302845#G4942_RS04770
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_013302845
AssemblyASM1330284v1 · Contighaploid
Genome composition3 275 116 bp · 36,5% GCAnaerostipes hadrus
Signal transduction countsGenes 65 · HK 32 · RR 32CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key