1 Response_reg#1
6-115 aa · 110 aa · 47.2% of protein
Raw token
Response_reg:6:6.92e-36:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4929_RS02150
Response regulator OmpR family
Anaerostipes hadrus · GCF_013302715
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013302715#G4929_RS02150Stable P2CS identifier used across views.
GenomeGCF_013302715Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Anaerostipes
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 233 aa (79.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa233 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-230 aa · 76 aa · 32.6% of protein
Raw token
Trans_reg_C:155:3.26e-29:230:76:77- Raw architecture: Response_reg:6:6.92e-36:115:111:111#Trans_reg_C:155:3.26e-29:230:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013302715::NZ_JAAIQN010000003.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span30074-31898Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4929_02155RefSeq proteinWP_173727999.1
Context group ID
GCF_013302715::NZ_JAAIQN010000003.1::G00018Context members
G4929_RS02150G4929_RS02155
Partner locus tags
G4929_RS02150G4929_RS02155
Partner old locus tags
G4929_02155G4929_02160
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173727999.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4929_RS02150Primary locus identifier stored in the genes table.
Old locus tagG4929_02155Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIQN010000003.1Sequence record reported by the local genomic context database.
Genomic interval30 074-30 775 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span30 074-31 898 ntGCF_013302715::NZ_JAAIQN010000003.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013302715::NZ_JAAIQN010000003.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIQN010000003.1All displayed genes belong to this local TCS context.
Neighborhood span30 074-31 898 nt1 825 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
30 074 nt31 898 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4929_RS02150GCF_013302715#G4929_RS02150
RROmpRCurrent focus
30 074-30 775 nt · Forward (+)
G4929_RS02155GCF_013302715#G4929_RS02155
HKClassic
30 765-31 898 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013302715#G4929_RS02150The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1095372
Simplified PFAM architecture for RROC_1095372
PFAM domain coverage: 186 / 233 aa (79.8%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[155-230]
- Domain count: 2
- Matched identifier: RROC_1095372
- Positioned domains: Response_reg 6-115 ; Trans_reg_C 155-230
Cluster members and taxonomy
Representative gene: GCF_013302715#G4929_RS02150
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 649 756 · GCF_013302715
AssemblyASM1330271v1 · Contighaploid
Genome composition3 160 777 bp · 37,0% GCAnaerostipes hadrus
Signal transduction countsGenes 48 · HK 24 · RR 23CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusAnaerostipes
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Anaerostipes
Related genes
Preview from the same derived genome key