1 Response_reg#1
7-120 aa · 114 aa · 46.3% of protein
Raw token
Response_reg:7:0.0000000000000198:120:117:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5A19_RS00205
Response regulator LytTR family
Blautia faecis · GCF_013302415
ClassRRTypeLytTRLength246 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013302415#G5A19_RS00205Stable P2CS identifier used across views.
GenomeGCF_013302415Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length246 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage199 / 246 aa (80.9%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa246 aa
Domain-by-domain annotation2 items
2 LytTR#2
145-229 aa · 85 aa · 34.6% of protein
Raw token
LytTR:145:0.00000000000000557:229:90:98- Raw architecture: Response_reg:7:0.0000000000000198:120:117:111#LytTR:145:0.00000000000000557:229:90:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013302415::NZ_JAAIPV010000001.1::G00014
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span51103-51843Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5A19_00205RefSeq proteinWP_173718010.1
Context group ID
GCF_013302415::NZ_JAAIPV010000001.1::G00014Context members
G5A19_RS00205
Partner locus tags
G5A19_RS00205
Partner old locus tags
G5A19_00205
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173718010.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5A19_RS00205Primary locus identifier stored in the genes table.
Old locus tagG5A19_00205Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIPV010000001.1Sequence record reported by the local genomic context database.
Genomic interval51 103-51 843 nt741 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span51 103-51 843 ntGCF_013302415::NZ_JAAIPV010000001.1::G00014
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013302415::NZ_JAAIPV010000001.1::G00014Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIPV010000001.1All displayed genes belong to this local TCS context.
Neighborhood span51 103-51 843 nt741 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
51 103 nt51 843 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G5A19_RS00205GCF_013302415#G5A19_RS00205
RRLytTRCurrent focus
51 103-51 843 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300845#G5B24_RS02560Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0776856
Simplified PFAM architecture for RROC_0776856
PFAM domain coverage: 193 / 246 aa (78.5%)
1 aa246 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[13-119] | LytTR[143-228]
- Domain count: 2
- Matched identifier: RROC_0776856
- Positioned domains: Response_reg 13-119 ; LytTR 143-228
Cluster members and taxonomy
Representative gene: GCF_013300845#G5B24_RS02560
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 871 665 · GCF_013302415
AssemblyASM1330241v1 · Contighaploid
Genome composition4 177 763 bp · 43,0% GCBlautia faecis
Signal transduction countsGenes 126 · HK 64 · RR 60CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key