1 PAS_3#1
437-501 aa · 65 aa · 7.2% of protein
Raw token
PAS_3:437:0.00000797:501:69:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5A00_RS02610
Histidine kinase, Hybrid
Blautia wexlerae · GCF_013302125
ClassHKTypeHybridLength904 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013302125#G5A00_RS02610Stable P2CS identifier used across views.
GenomeGCF_013302125Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length904 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage368 / 904 aa (40.7%)Merged over positioned domains only.
Domain description1 PAS_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation4 items
2 HisKA#2
530-596 aa · 67 aa · 7.4% of protein
Raw token
HisKA:530:0.00000000000000302:596:68:643 HATPase_c#3
645-762 aa · 118 aa · 13.1% of protein
Raw token
HATPase_c:645:4.31e-26:762:118:1094 Response_reg#4
784-901 aa · 118 aa · 13.1% of protein
Raw token
Response_reg:784:1.58e-31:901:118:111- Raw architecture: PAS_3:437:0.00000797:501:69:89#HisKA:530:0.00000000000000302:596:68:64#HATPase_c:645:4.31e-26:762:118:109#Response_reg:784:1.58e-31:901:118:111
- Domain description: 1 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013302125::NZ_JAAIPO010000005.1::G00069
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span54925-57639Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5A00_02620RefSeq proteinWP_025580123.1
Context group ID
GCF_013302125::NZ_JAAIPO010000005.1::G00069Context members
G5A00_RS02610
Partner locus tags
G5A00_RS02610
Partner old locus tags
G5A00_02620
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_025580123.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5A00_RS02610Primary locus identifier stored in the genes table.
Old locus tagG5A00_02620Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIPO010000005.1Sequence record reported by the local genomic context database.
Genomic interval54 925-57 639 nt2 715 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span54 925-57 639 ntGCF_013302125::NZ_JAAIPO010000005.1::G00069
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013302125::NZ_JAAIPO010000005.1::G00069Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIPO010000005.1All displayed genes belong to this local TCS context.
Neighborhood span54 925-57 639 nt2 715 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
54 925 nt57 639 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G5A00_RS02610GCF_013302125#G5A00_RS02610
HKHybridCurrent focus
54 925-57 639 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000484655#K316_RS23430Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0400203
Simplified PFAM architecture for HKOC_0400203
PFAM domain coverage: 299 / 904 aa (33.1%)
1 aa904 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[531-596] | HATPase_c[646-761] | Response_reg[784-900]
- Domain count: 3
- Matched identifier: HKOC_0400203
- Positioned domains: HisKA 531-596 ; HATPase_c 646-761 ; Response_reg 784-900
Cluster members and taxonomy
Representative gene: GCF_000484655#K316_RS23430
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_013302125
AssemblyASM1330212v1 · Contighaploid
Genome composition4 466 268 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 158 · HK 78 · RR 79CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key