1 Response_reg#1
5-114 aa · 110 aa · 47.2% of protein
Raw token
Response_reg:5:2.16e-36:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5A00_RS00880
Response regulator OmpR family
Blautia wexlerae · GCF_013302125
ClassRRTypeOmpRLength233 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013302125#G5A00_RS00880Stable P2CS identifier used across views.
GenomeGCF_013302125Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length233 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 233 aa (79.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Biotite-like viewServer-side Python rendering inspired by the Biotite sigma-domain example.
Domain-by-domain annotation2 items
2 Trans_reg_C#2
155-230 aa · 76 aa · 32.6% of protein
Raw token
Trans_reg_C:155:7.24e-32:230:76:77- Raw architecture: Response_reg:5:2.16e-36:114:111:111#Trans_reg_C:155:7.24e-32:230:76:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013302125::NZ_JAAIPO010000002.1::G00045
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span45706-47479Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5A00_00875RefSeq proteinWP_004853366.1
Context group ID
GCF_013302125::NZ_JAAIPO010000002.1::G00045Context members
G5A00_RS00880G5A00_RS00885
Partner locus tags
G5A00_RS00880G5A00_RS00885
Partner old locus tags
G5A00_00875G5A00_00880
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_004853366.1Primary protein accession used for annex mappings.
UniProt accessionA0A174H2T5Primary UniProt accession resolved in the annex database.
UniProt IDA0A174H2T5_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5A00_RS00880Primary locus identifier stored in the genes table.
Old locus tagG5A00_00875Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIPO010000002.1Sequence record reported by the local genomic context database.
Genomic interval45 706-46 407 nt702 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span45 706-47 479 ntGCF_013302125::NZ_JAAIPO010000002.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013302125::NZ_JAAIPO010000002.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIPO010000002.1All displayed genes belong to this local TCS context.
Neighborhood span45 706-47 479 nt1 774 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
45 706 nt47 479 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G5A00_RS00880GCF_013302125#G5A00_RS00880
RROmpRCurrent focus
45 706-46 407 nt · Forward (+)
G5A00_RS00885GCF_013302125#G5A00_RS00885
HKClassic
46 394-47 479 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000020605#EUBREC_RS15865Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1080559
Simplified PFAM architecture for RROC_1080559
PFAM domain coverage: 186 / 233 aa (79.8%)
1 aa233 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[155-231]
- Domain count: 2
- Matched identifier: RROC_1080559
- Positioned domains: Response_reg 5-113 ; Response_reg 5-113 ; Trans_reg_C 155-231 ; Trans_reg_C 155-231
Cluster members and taxonomy
Representative gene: GCF_000020605#EUBREC_RS15865
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 418 240 · GCF_013302125
AssemblyASM1330212v1 · Contighaploid
Genome composition4 466 268 bp · 41,0% GCBlautia wexlerae
Signal transduction countsGenes 158 · HK 78 · RR 79CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key