1 HisKA#1
131-194 aa · 64 aa · 18.1% of protein
Raw token
HisKA:131:0.000000000000129:194:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5A92_RS06015
Histidine kinase, Classic
Blautia massiliensis (ex Durand et al. 2017) · GCF_013301805
ClassHKTypeClassicLength354 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013301805#G5A92_RS06015Stable P2CS identifier used across views.
GenomeGCF_013301805Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length354 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 354 aa (49.2%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa354 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
243-352 aa · 110 aa · 31.1% of protein
Raw token
HATPase_c:243:2.28e-25:352:112:109- Raw architecture: HisKA:131:0.000000000000129:194:64:64#HATPase_c:243:2.28e-25:352:112:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013301805::NZ_JAAIUJ010000003.1::G00037
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span303345-304409Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5A92_06030RefSeq proteinWP_173753575.1
Context group ID
GCF_013301805::NZ_JAAIUJ010000003.1::G00037Context members
G5A92_RS06015
Partner locus tags
G5A92_RS06015
Partner old locus tags
G5A92_06030
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173753575.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5A92_RS06015Primary locus identifier stored in the genes table.
Old locus tagG5A92_06030Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIUJ010000003.1Sequence record reported by the local genomic context database.
Genomic interval303 345-304 409 nt1 065 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span303 345-304 409 ntGCF_013301805::NZ_JAAIUJ010000003.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301805::NZ_JAAIUJ010000003.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIUJ010000003.1All displayed genes belong to this local TCS context.
Neighborhood span303 345-304 409 nt1 065 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
303 345 nt304 409 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G5A92_RS06015GCF_013301805#G5A92_RS06015
HKClassicCurrent focus
303 345-304 409 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013301805#G5A92_RS06015The current gene is the representative for this cluster.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2781162
Simplified PFAM architecture for HKOC_2781162
PFAM domain coverage: 174 / 354 aa (49.2%)
1 aa354 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[132-195] | HATPase_c[244-353]
- Domain count: 2
- Matched identifier: HKOC_2781162
- Positioned domains: HisKA 132-195 ; HATPase_c 244-353
Cluster members and taxonomy
Representative gene: GCF_013301805#G5A92_RS06015
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 737 424 · GCF_013301805
AssemblyASM1330180v1 · Contighaploid
Genome composition3 610 834 bp · 44,0% GCBlautia massiliensis (ex Durand et al. 2017)
Signal transduction countsGenes 98 · HK 47 · RR 49CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key