1 Response_reg#1
5-114 aa · 110 aa · 47.6% of protein
Raw token
Response_reg:5:2.11e-34:114:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5A92_RS06005
Response regulator OmpR family
Blautia massiliensis (ex Durand et al. 2017) · GCF_013301805
ClassRRTypeOmpRLength231 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013301805#G5A92_RS06005Stable P2CS identifier used across views.
GenomeGCF_013301805Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length231 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage188 / 231 aa (81.4%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa231 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
154-231 aa · 78 aa · 33.8% of protein
Raw token
Trans_reg_C:154:8.76e-32:231:78:77- Raw architecture: Response_reg:5:2.11e-34:114:111:111#Trans_reg_C:154:8.76e-32:231:78:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013301805::NZ_JAAIUJ010000003.1::G00036
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span302110-302805Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5A92_06020RefSeq proteinWP_118069938.1
Context group ID
GCF_013301805::NZ_JAAIUJ010000003.1::G00036Context members
G5A92_RS06005
Partner locus tags
G5A92_RS06005
Partner old locus tags
G5A92_06020
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118069938.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5A92_RS06005Primary locus identifier stored in the genes table.
Old locus tagG5A92_06020Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIUJ010000003.1Sequence record reported by the local genomic context database.
Genomic interval302 110-302 805 nt696 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span302 110-302 805 ntGCF_013301805::NZ_JAAIUJ010000003.1::G00036
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301805::NZ_JAAIUJ010000003.1::G00036Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIUJ010000003.1All displayed genes belong to this local TCS context.
Neighborhood span302 110-302 805 nt696 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
302 110 nt302 805 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G5A92_RS06005GCF_013301805#G5A92_RS06005
RROmpRCurrent focus
302 110-302 805 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013301805#G5A92_RS06005The current gene is the representative for this cluster.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1173249
Simplified PFAM architecture for RROC_1173249
PFAM domain coverage: 186 / 231 aa (80.5%)
1 aa231 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[5-113] | Trans_reg_C[154-230]
- Domain count: 2
- Matched identifier: RROC_1173249
- Positioned domains: Response_reg 5-113 ; Trans_reg_C 154-230
Cluster members and taxonomy
Representative gene: GCF_013301805#G5A92_RS06005
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 737 424 · GCF_013301805
AssemblyASM1330180v1 · Contighaploid
Genome composition3 610 834 bp · 44,0% GCBlautia massiliensis (ex Durand et al. 2017)
Signal transduction countsGenes 98 · HK 47 · RR 49CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key