1 Response_reg#1
8-116 aa · 109 aa · 32.7% of protein
Raw token
Response_reg:8:2.93e-26:116:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4478_RS15600
Response regulator, unclassified
Coprococcus comes · GCF_013301525
ClassRRTypeunclassifiedLength333 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013301525#G4478_RS15600Stable P2CS identifier used across views.
GenomeGCF_013301525Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length333 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage109 / 333 aa (32.7%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa333 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:8:2.93e-26:116:109:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013301525::NZ_JAAIOL010000012.1::G00006
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span44757-45758Genomic interval covered by the local TCS group.
Identifiers
Context group ID
GCF_013301525::NZ_JAAIOL010000012.1::G00006Context members
G4478_RS15600
Partner locus tags
G4478_RS15600
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_243863602.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4478_RS15600Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconNZ_JAAIOL010000012.1Sequence record reported by the local genomic context database.
Genomic interval44 757-45 758 nt1 002 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span44 757-45 758 ntGCF_013301525::NZ_JAAIOL010000012.1::G00006
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301525::NZ_JAAIOL010000012.1::G00006Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOL010000012.1All displayed genes belong to this local TCS context.
Neighborhood span44 757-45 758 nt1 002 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
44 757 nt45 758 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4478_RS15600GCF_013301525#G4478_RS15600
RRunclassifiedCurrent focus
44 757-45 758 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299755#G4366_RS15705Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GGDEF_22 domains in the representative PFAM annotation.
PFAM architecture for RROC_0516503
Simplified PFAM architecture for RROC_0516503
PFAM domain coverage: 216 / 333 aa (64.9%)
1 aa333 aa
Response_regGGDEF_2
- Simplified architecture: Response_reg + GGDEF_2
- Raw architecture: Response_reg[7-118] | GGDEF_2[183-286]
- Domain count: 2
- Matched identifier: RROC_0516503
- Positioned domains: Response_reg 7-118 ; GGDEF_2 183-286
Cluster members and taxonomy
Representative gene: GCF_013299755#G4366_RS15705
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_013301525
AssemblyASM1330152v1 · Contighaploid
Genome composition3 206 473 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 90 · HK 46 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key