1 HAMP#1
152-222 aa · 71 aa · 15.5% of protein
Raw token
HAMP:152:0.0000608:222:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4478_RS14785
Histidine kinase, Classic
Coprococcus comes · GCF_013301525
ClassHKTypeClassicLength458 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013301525#G4478_RS14785Stable P2CS identifier used across views.
GenomeGCF_013301525Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length458 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage239 / 458 aa (52.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa458 aa
Domain-by-domain annotation3 items
2 HisKA#2
233-294 aa · 62 aa · 13.5% of protein
Raw token
HisKA:233:0.0000000000112:294:62:643 HATPase_c#3
346-451 aa · 106 aa · 23.1% of protein
Raw token
HATPase_c:346:3.35e-17:451:106:109- Raw architecture: HAMP:152:0.0000608:222:71:69#HisKA:233:0.0000000000112:294:62:64#HATPase_c:346:3.35e-17:451:106:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013301525::NZ_JAAIOL010000036.1::G00037
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4000-6026Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4478_14800RefSeq proteinWP_155204543.1
Context group ID
GCF_013301525::NZ_JAAIOL010000036.1::G00037Context members
G4478_RS14780G4478_RS14785
Partner locus tags
G4478_RS14780G4478_RS14785
Partner old locus tags
G4478_14795G4478_14800
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_155204543.1Primary protein accession used for annex mappings.
UniProt accessionA0A844KFY9Primary UniProt accession resolved in the annex database.
UniProt IDA0A844KFY9_9FIRMDisplay identifier provided by UniProt.
GO / PubMed2 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4478_RS14785Primary locus identifier stored in the genes table.
Old locus tagG4478_14800Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOL010000036.1Sequence record reported by the local genomic context database.
Genomic interval4 650-6 026 nt1 377 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 000-6 026 ntGCF_013301525::NZ_JAAIOL010000036.1::G00037
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301525::NZ_JAAIOL010000036.1::G00037Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOL010000036.1All displayed genes belong to this local TCS context.
Neighborhood span4 000-6 026 nt2 027 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 000 nt6 026 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4478_RS14780GCF_013301525#G4478_RS14780
RROmpR
4 000-4 662 nt · Forward (+)
G4478_RS14785GCF_013301525#G4478_RS14785
HKClassicCurrent focus
4 650-6 026 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_009718305#GMD21_RS09925Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1863831
Simplified PFAM architecture for HKOC_1863831
PFAM domain coverage: 166 / 458 aa (36.2%)
1 aa458 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[234-294] | HATPase_c[347-451]
- Domain count: 2
- Matched identifier: HKOC_1863831
- Positioned domains: HisKA 234-294 ; HATPase_c 347-451
Cluster members and taxonomy
Representative gene: GCF_009718305#GMD21_RS09925
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_013301525
AssemblyASM1330152v1 · Contighaploid
Genome composition3 206 473 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 90 · HK 46 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key