1 Response_reg#1
5-117 aa · 113 aa · 21.3% of protein
Raw token
Response_reg:5:4.36e-25:117:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4478_RS12845
Response regulator, unclassified
Coprococcus comes · GCF_013301525
ClassRRTypeunclassifiedLength531 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013301525#G4478_RS12845Stable P2CS identifier used across views.
GenomeGCF_013301525Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length531 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage194 / 531 aa (36.5%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa531 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
434-476 aa · 43 aa · 8.1% of protein
Raw token
HTH_AraC:434:0.000048:476:43:423 HTH_AraC#3
489-526 aa · 38 aa · 7.2% of protein
Raw token
HTH_AraC:489:0.0000000164:526:38:42- Raw architecture: Response_reg:5:4.36e-25:117:113:111#HTH_AraC:434:0.000048:476:43:42#HTH_AraC:489:0.0000000164:526:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013301525::NZ_JAAIOL010000024.1::G00026
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span4715-8021Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4478_12845RefSeq proteinWP_173690690.1
Context group ID
GCF_013301525::NZ_JAAIOL010000024.1::G00026Context members
G4478_RS12845G4478_RS12850
Partner locus tags
G4478_RS12845G4478_RS12850
Partner old locus tags
G4478_12845G4478_12850
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173690690.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4478_RS12845Primary locus identifier stored in the genes table.
Old locus tagG4478_12845Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOL010000024.1Sequence record reported by the local genomic context database.
Genomic interval4 715-6 310 nt1 596 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span4 715-8 021 ntGCF_013301525::NZ_JAAIOL010000024.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301525::NZ_JAAIOL010000024.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOL010000024.1All displayed genes belong to this local TCS context.
Neighborhood span4 715-8 021 nt3 307 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
4 715 nt8 021 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4478_RS12845GCF_013301525#G4478_RS12845
RRunclassifiedCurrent focus
4 715-6 310 nt · Forward (+)
G4478_RS12850GCF_013301525#G4478_RS12850
HKClassic
6 297-8 021 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299755#G4366_RS13180Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0110296
Simplified PFAM architecture for RROC_0110296
PFAM domain coverage: 190 / 531 aa (35.8%)
1 aa531 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-116] | HTH_18[449-526]
- Domain count: 2
- Matched identifier: RROC_0110296
- Positioned domains: Response_reg 5-116 ; HTH_18 449-526
Cluster members and taxonomy
Representative gene: GCF_013299755#G4366_RS13180
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_013301525
AssemblyASM1330152v1 · Contighaploid
Genome composition3 206 473 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 90 · HK 46 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key