1 HAMP#1
85-155 aa · 71 aa · 18.0% of protein
Raw token
HAMP:85:0.00000000163:155:71:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4478_RS12265
Histidine kinase, Classic
Coprococcus comes · GCF_013301525
ClassHKTypeClassicLength394 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013301525#G4478_RS12265Stable P2CS identifier used across views.
GenomeGCF_013301525Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length394 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage247 / 394 aa (62.7%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa394 aa
Domain-by-domain annotation3 items
2 HisKA#2
160-226 aa · 67 aa · 17.0% of protein
Raw token
HisKA:160:0.0000000000218:226:67:643 HATPase_c#3
276-384 aa · 109 aa · 27.7% of protein
Raw token
HATPase_c:276:3.3e-30:384:109:109- Raw architecture: HAMP:85:0.00000000163:155:71:69#HisKA:160:0.0000000000218:226:67:64#HATPase_c:276:3.3e-30:384:109:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013301525::NZ_JAAIOL010000021.1::G00023
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span31809-33685Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4478_12265RefSeq proteinWP_173686809.1
Context group ID
GCF_013301525::NZ_JAAIOL010000021.1::G00023Context members
G4478_RS12265G4478_RS12270
Partner locus tags
G4478_RS12265G4478_RS12270
Partner old locus tags
G4478_12265G4478_12270
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173686809.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4478_RS12265Primary locus identifier stored in the genes table.
Old locus tagG4478_12265Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOL010000021.1Sequence record reported by the local genomic context database.
Genomic interval31 809-32 993 nt1 185 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span31 809-33 685 ntGCF_013301525::NZ_JAAIOL010000021.1::G00023
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301525::NZ_JAAIOL010000021.1::G00023Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOL010000021.1All displayed genes belong to this local TCS context.
Neighborhood span31 809-33 685 nt1 877 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
31 809 nt33 685 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4478_RS12265GCF_013301525#G4478_RS12265
HKClassicCurrent focus
31 809-32 993 nt · Reverse (-)
G4478_RS12270GCF_013301525#G4478_RS12270
RROmpR
32 990-33 685 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299545#G4412_RS10810Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2497496
Simplified PFAM architecture for HKOC_2497496
PFAM domain coverage: 172 / 394 aa (43.7%)
1 aa394 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[160-225] | HATPase_c[279-384]
- Domain count: 2
- Matched identifier: HKOC_2497496
- Positioned domains: HisKA 160-225 ; HATPase_c 279-384
Cluster members and taxonomy
Representative gene: GCF_013299545#G4412_RS10810
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_013301525
AssemblyASM1330152v1 · Contighaploid
Genome composition3 206 473 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 90 · HK 46 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key