1 HAMP#1
174-241 aa · 68 aa · 14.5% of protein
Raw token
HAMP:174:0.00000000000626:241:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4478_RS08450
Histidine kinase, Classic
Coprococcus comes · GCF_013301525
ClassHKTypeClassicLength470 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013301525#G4478_RS08450Stable P2CS identifier used across views.
GenomeGCF_013301525Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length470 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage241 / 470 aa (51.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa470 aa
Domain-by-domain annotation3 items
2 HisKA#2
246-305 aa · 60 aa · 12.8% of protein
Raw token
HisKA:246:4.85e-16:305:60:643 HATPase_c#3
357-469 aa · 113 aa · 24.0% of protein
Raw token
HATPase_c:357:7.11e-32:469:113:109- Raw architecture: HAMP:174:0.00000000000626:241:68:69#HisKA:246:4.85e-16:305:60:64#HATPase_c:357:7.11e-32:469:113:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013301525::NZ_JAAIOL010000011.1::G00004
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span11905-14018Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4478_08445RefSeq proteinWP_173690065.1
Context group ID
GCF_013301525::NZ_JAAIOL010000011.1::G00004Context members
G4478_RS08445G4478_RS08450
Partner locus tags
G4478_RS08445G4478_RS08450
Partner old locus tags
G4478_08440G4478_08445
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173690065.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4478_RS08450Primary locus identifier stored in the genes table.
Old locus tagG4478_08445Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOL010000011.1Sequence record reported by the local genomic context database.
Genomic interval12 606-14 018 nt1 413 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span11 905-14 018 ntGCF_013301525::NZ_JAAIOL010000011.1::G00004
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301525::NZ_JAAIOL010000011.1::G00004Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOL010000011.1All displayed genes belong to this local TCS context.
Neighborhood span11 905-14 018 nt2 114 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 905 nt14 018 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4478_RS08445GCF_013301525#G4478_RS08445
RROmpR
11 905-12 606 nt · Forward (+)
G4478_RS08450GCF_013301525#G4478_RS08450
HKClassicCurrent focus
12 606-14 018 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299755#G4366_RS03830Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1720613
Simplified PFAM architecture for HKOC_1720613
PFAM domain coverage: 219 / 470 aa (46.6%)
1 aa470 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[196-240] | HisKA[246-308] | HATPase_c[358-468]
- Domain count: 3
- Matched identifier: HKOC_1720613
- Positioned domains: HAMP 196-240 ; HisKA 246-308 ; HATPase_c 358-468
Cluster members and taxonomy
Representative gene: GCF_013299755#G4366_RS03830
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_013301525
AssemblyASM1330152v1 · Contighaploid
Genome composition3 206 473 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 90 · HK 46 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key