1 Response_reg#1
4-117 aa · 114 aa · 21.2% of protein
Raw token
Response_reg:4:7.91e-31:117:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4478_RS03680
Response regulator, unclassified
Coprococcus comes · GCF_013301525
ClassRRTypeunclassifiedLength538 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013301525#G4478_RS03680Stable P2CS identifier used across views.
GenomeGCF_013301525Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length538 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage193 / 538 aa (35.9%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa538 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
444-484 aa · 41 aa · 7.6% of protein
Raw token
HTH_AraC:444:0.000000151:484:41:423 HTH_AraC#3
496-533 aa · 38 aa · 7.1% of protein
Raw token
HTH_AraC:496:0.00000148:533:38:42- Raw architecture: Response_reg:4:7.91e-31:117:114:111#HTH_AraC:444:0.000000151:484:41:42#HTH_AraC:496:0.00000148:533:38:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013301525::NZ_JAAIOL010000003.1::G00040
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span113677-116784Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4478_03675RefSeq proteinWP_173690098.1
Context group ID
GCF_013301525::NZ_JAAIOL010000003.1::G00040Context members
G4478_RS03680G4478_RS03685
Partner locus tags
G4478_RS03680G4478_RS03685
Partner old locus tags
G4478_03675G4478_03680
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173690098.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4478_RS03680Primary locus identifier stored in the genes table.
Old locus tagG4478_03675Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOL010000003.1Sequence record reported by the local genomic context database.
Genomic interval113 677-115 293 nt1 617 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span113 677-116 784 ntGCF_013301525::NZ_JAAIOL010000003.1::G00040
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301525::NZ_JAAIOL010000003.1::G00040Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOL010000003.1All displayed genes belong to this local TCS context.
Neighborhood span113 677-116 784 nt3 108 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
113 677 nt116 784 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4478_RS03680GCF_013301525#G4478_RS03680
RRunclassifiedCurrent focus
113 677-115 293 nt · Forward (+)
G4478_RS03685GCF_013301525#G4478_RS03685
HKClassic
115 297-116 784 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299755#G4366_RS04785Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + GGDEF_2 + HTH_183 domains in the representative PFAM annotation.
PFAM architecture for RROC_0094878
Simplified PFAM architecture for RROC_0094878
PFAM domain coverage: 315 / 538 aa (58.6%)
1 aa538 aa
Response_regGGDEF_2HTH_18
- Simplified architecture: Response_reg + GGDEF_2 + HTH_18
- Raw architecture: Response_reg[4-117] | GGDEF_2[166-287] | HTH_18[457-535]
- Domain count: 3
- Matched identifier: RROC_0094878
- Positioned domains: Response_reg 4-117 ; GGDEF_2 166-287 ; HTH_18 457-535
Cluster members and taxonomy
Representative gene: GCF_013299755#G4366_RS04785
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_013301525
AssemblyASM1330152v1 · Contighaploid
Genome composition3 206 473 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 90 · HK 46 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key