1 HAMP#1
94-161 aa · 68 aa · 17.0% of protein
Raw token
HAMP:94:0.00000000768:161:68:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4393_RS09360
Histidine kinase, Classic
Coprococcus comes · GCF_013301475
ClassHKTypeClassicLength400 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013301475#G4393_RS09360Stable P2CS identifier used across views.
GenomeGCF_013301475Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length400 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage237 / 400 aa (59.3%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa400 aa
Domain-by-domain annotation3 items
2 HisKA#2
178-241 aa · 64 aa · 16.0% of protein
Raw token
HisKA:178:0.000000119:241:64:643 HATPase_c#3
286-390 aa · 105 aa · 26.3% of protein
Raw token
HATPase_c:286:2.8e-18:390:107:109- Raw architecture: HAMP:94:0.00000000768:161:68:69#HisKA:178:0.000000119:241:64:64#HATPase_c:286:2.8e-18:390:107:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013301475::NZ_JAAIOK010000012.1::G00007
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span1278-3142Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4393_09390RefSeq proteinWP_005333442.1
Context group ID
GCF_013301475::NZ_JAAIOK010000012.1::G00007Context members
G4393_RS09360G4393_RS09365
Partner locus tags
G4393_RS09360G4393_RS09365
Partner old locus tags
G4393_09390G4393_09395
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_005333442.1Primary protein accession used for annex mappings.
UniProt accessionA0AAJ3KLL7Primary UniProt accession resolved in the annex database.
UniProt IDA0AAJ3KLL7_MEDGNDisplay identifier provided by UniProt.
GO / PubMed3 / 1Unique GO terms and literature references available below.
Reference hubs
GO terms
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4393_RS09360Primary locus identifier stored in the genes table.
Old locus tagG4393_09390Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOK010000012.1Sequence record reported by the local genomic context database.
Genomic interval1 278-2 480 nt1 203 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1 278-3 142 ntGCF_013301475::NZ_JAAIOK010000012.1::G00007
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301475::NZ_JAAIOK010000012.1::G00007Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOK010000012.1All displayed genes belong to this local TCS context.
Neighborhood span1 278-3 142 nt1 865 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 278 nt3 142 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4393_RS09360GCF_013301475#G4393_RS09360
HKClassicCurrent focus
1 278-2 480 nt · Reverse (-)
G4393_RS09365GCF_013301475#G4393_RS09365
RROmpR
2 468-3 142 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000169235#DORFOR_RS08790Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2440591
Simplified PFAM architecture for HKOC_2440591
PFAM domain coverage: 216 / 400 aa (54.0%)
1 aa400 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[113-161] | HisKA[178-241] | HATPase_c[287-389]
- Domain count: 3
- Matched identifier: HKOC_2440591
- Positioned domains: HAMP 113-161 ; HisKA 178-241 ; HATPase_c 287-389
Cluster members and taxonomy
Representative gene: GCF_000169235#DORFOR_RS08790
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_013301475
AssemblyASM1330147v1 · Contighaploid
Genome composition3 191 628 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 90 · HK 46 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key