1 PAS_3#1
168-256 aa · 89 aa · 8.3% of protein
Raw token
PAS_3:168:3.39e-21:256:89:89P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4393_RS08670
Histidine kinase, Hybrid
Coprococcus comes · GCF_013301475
ClassHKTypeHybridLength1068 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013301475#G4393_RS08670Stable P2CS identifier used across views.
GenomeGCF_013301475Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
PAS_3HisKAHATPase_cResponse_reg
Protein length1068 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage505 / 1068 aa (47.3%)Merged over positioned domains only.
Domain description1 PAS_3,1 HisKA,1 HATPase_c,2 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa1068 aa
Domain-by-domain annotation5 items
2 HisKA#2
558-624 aa · 67 aa · 6.3% of protein
Raw token
HisKA:558:1.79e-16:624:67:643 HATPase_c#3
671-785 aa · 115 aa · 10.8% of protein
Raw token
HATPase_c:671:3.6e-31:785:115:1094 Response_reg#4
805-921 aa · 117 aa · 11.0% of protein
Raw token
Response_reg:805:8.27e-19:921:117:1115 Response_reg#5
949-1065 aa · 117 aa · 11.0% of protein
Raw token
Response_reg:949:1.8e-29:1065:117:111- Raw architecture: PAS_3:168:3.39e-21:256:89:89#HisKA:558:1.79e-16:624:67:64#HATPase_c:671:3.6e-31:785:115:109#Response_reg:805:8.27e-19:921:117:111#Response_reg:949:1.8e-29:1065:117:111
- Domain description: 1 PAS_3,1 HisKA,1 HATPase_c,2 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013301475::NZ_JAAIOK010000010.1::G00002
Group size22 locus tags listed below.
HK / RR2 / 0Counts resolved for the local TCS neighborhood.
Context span33323-38677Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4393_08695RefSeq proteinWP_173690401.1
Context group ID
GCF_013301475::NZ_JAAIOK010000010.1::G00002Context members
G4393_RS08670G4393_RS08675
Partner locus tags
G4393_RS08670G4393_RS08675
Partner old locus tags
G4393_08695G4393_08700
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173690401.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4393_RS08670Primary locus identifier stored in the genes table.
Old locus tagG4393_08695Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOK010000010.1Sequence record reported by the local genomic context database.
Genomic interval33 323-36 529 nt3 207 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span33 323-38 677 ntGCF_013301475::NZ_JAAIOK010000010.1::G00002
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301475::NZ_JAAIOK010000010.1::G00002Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOK010000010.1All displayed genes belong to this local TCS context.
Neighborhood span33 323-38 677 nt5 355 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
33 323 nt38 677 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4393_RS08670GCF_013301475#G4393_RS08670
HKHybridCurrent focus
33 323-36 529 nt · Forward (+)
G4393_RS08675GCF_013301475#G4393_RS08675
HKHybrid
36 755-38 677 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299755#G4366_RS09500Use this link to inspect the representative gene detail.
PFAM architecturePAS_3 + HisKA + HATPase_c + Response_reg + Response_reg5 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0247815
Simplified PFAM architecture for HKOC_0247815
PFAM domain coverage: 506 / 1068 aa (47.4%)
1 aa1068 aa
PAS_3HisKAHATPase_cResponse_regResponse_reg
- Simplified architecture: PAS_3 + HisKA + HATPase_c + Response_reg + Response_reg
- Raw architecture: PAS_3[167-256] | HisKA[558-624] | HATPase_c[671-787] | Response_reg[805-920] | Response_reg[949-1064]
- Domain count: 5
- Matched identifier: HKOC_0247815
- Positioned domains: PAS_3 167-256 ; HisKA 558-624 ; HATPase_c 671-787 ; Response_reg 805-920 ; Response_reg 949-1064
Cluster members and taxonomy
Representative gene: GCF_013299755#G4366_RS09500
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_013301475
AssemblyASM1330147v1 · Contighaploid
Genome composition3 191 628 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 90 · HK 46 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key