1 HAMP#1
170-239 aa · 70 aa · 14.4% of protein
Raw token
HAMP:170:1.07e-16:239:70:69P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4393_RS05345
Histidine kinase, Classic
Coprococcus comes · GCF_013301475
ClassHKTypeClassicLength486 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013301475#G4393_RS05345Stable P2CS identifier used across views.
GenomeGCF_013301475Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
HAMPHisKAHATPase_c
Protein length486 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage249 / 486 aa (51.2%)Merged over positioned domains only.
Domain description1 HAMP,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa486 aa
Domain-by-domain annotation3 items
2 HisKA#2
264-331 aa · 68 aa · 14.0% of protein
Raw token
HisKA:264:0.00000000000000156:331:68:643 HATPase_c#3
376-486 aa · 111 aa · 22.8% of protein
Raw token
HATPase_c:376:2.38e-21:486:115:109- Raw architecture: HAMP:170:1.07e-16:239:70:69#HisKA:264:0.00000000000000156:331:68:64#HATPase_c:376:2.38e-21:486:115:109
- Domain description: 1 HAMP,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013301475::NZ_JAAIOK010000004.1::G00045
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span216466-218603Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4393_05375RefSeq proteinWP_022220128.1
Context group ID
GCF_013301475::NZ_JAAIOK010000004.1::G00045Context members
G4393_RS05340G4393_RS05345
Partner locus tags
G4393_RS05340G4393_RS05345
Partner old locus tags
G4393_05370G4393_05375
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_022220128.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4393_RS05345Primary locus identifier stored in the genes table.
Old locus tagG4393_05375Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOK010000004.1Sequence record reported by the local genomic context database.
Genomic interval217 143-218 603 nt1 461 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span216 466-218 603 ntGCF_013301475::NZ_JAAIOK010000004.1::G00045
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301475::NZ_JAAIOK010000004.1::G00045Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOK010000004.1All displayed genes belong to this local TCS context.
Neighborhood span216 466-218 603 nt2 138 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
216 466 nt218 603 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4393_RS05340GCF_013301475#G4393_RS05340
RROmpR
216 466-217 146 nt · Forward (+)
G4393_RS05345GCF_013301475#G4393_RS05345
HKClassicCurrent focus
217 143-218 603 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299755#G4366_RS05340Use this link to inspect the representative gene detail.
PFAM architectureHAMP + HisKA + HATPase_c3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_1570315
Simplified PFAM architecture for HKOC_1570315
PFAM domain coverage: 227 / 486 aa (46.7%)
1 aa486 aa
HAMPHisKAHATPase_c
- Simplified architecture: HAMP + HisKA + HATPase_c
- Raw architecture: HAMP[188-239] | HisKA[264-329] | HATPase_c[377-485]
- Domain count: 3
- Matched identifier: HKOC_1570315
- Positioned domains: HAMP 188-239 ; HisKA 264-329 ; HATPase_c 377-485
Cluster members and taxonomy
Representative gene: GCF_013299755#G4366_RS05340
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_013301475
AssemblyASM1330147v1 · Contighaploid
Genome composition3 191 628 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 90 · HK 46 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key