1 Response_reg#1
6-115 aa · 110 aa · 46.4% of protein
Raw token
Response_reg:6:0.00000000000000154:115:112:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4393_RS04385
Response regulator LytTR family
Coprococcus comes · GCF_013301475
ClassRRTypeLytTRLength237 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013301475#G4393_RS04385Stable P2CS identifier used across views.
GenomeGCF_013301475Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length237 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage201 / 237 aa (84.8%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa237 aa
Domain-by-domain annotation2 items
2 LytTR#2
139-229 aa · 91 aa · 38.4% of protein
Raw token
LytTR:139:1.72e-19:229:97:98- Raw architecture: Response_reg:6:0.00000000000000154:115:112:111#LytTR:139:1.72e-19:229:97:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013301475::NZ_JAAIOK010000004.1::G00043
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span34290-35003Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4393_04410RefSeq proteinWP_173686834.1
Context group ID
GCF_013301475::NZ_JAAIOK010000004.1::G00043Context members
G4393_RS04385
Partner locus tags
G4393_RS04385
Partner old locus tags
G4393_04410
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173686834.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4393_RS04385Primary locus identifier stored in the genes table.
Old locus tagG4393_04410Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOK010000004.1Sequence record reported by the local genomic context database.
Genomic interval34 290-35 003 nt714 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span34 290-35 003 ntGCF_013301475::NZ_JAAIOK010000004.1::G00043
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301475::NZ_JAAIOK010000004.1::G00043Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOK010000004.1All displayed genes belong to this local TCS context.
Neighborhood span34 290-35 003 nt714 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
34 290 nt35 003 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4393_RS04385GCF_013301475#G4393_RS04385
RRLytTRCurrent focus
34 290-35 003 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299545#G4412_RS11070Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0971843
Simplified PFAM architecture for RROC_0971843
PFAM domain coverage: 201 / 237 aa (84.8%)
1 aa237 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[6-116] | LytTR[140-229]
- Domain count: 2
- Matched identifier: RROC_0971843
- Positioned domains: Response_reg 6-116 ; LytTR 140-229
Cluster members and taxonomy
Representative gene: GCF_013299545#G4412_RS11070
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_013301475
AssemblyASM1330147v1 · Contighaploid
Genome composition3 191 628 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 90 · HK 46 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key