1 GAF#1
29-151 aa · 123 aa · 14.6% of protein
Raw token
GAF:29:0.00000286:151:123:133P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4393_RS04095
Histidine kinase, Hybrid
Coprococcus comes · GCF_013301475
ClassHKTypeHybridLength844 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013301475#G4393_RS04095Stable P2CS identifier used across views.
GenomeGCF_013301475Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
GAFPAS_3HisKAHATPase_cResponse_reg
Protein length844 aaLength used to scale native and Biotite-like views.
Annotated domains55 with usable coordinates.
Domain coverage510 / 844 aa (60.4%)Merged over positioned domains only.
Domain description1 GAF,1 PAS_3,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa844 aa
Domain-by-domain annotation5 items
2 PAS_3#2
225-309 aa · 85 aa · 10.1% of protein
Raw token
PAS_3:225:0.0000854:309:86:893 HisKA#3
468-533 aa · 66 aa · 7.8% of protein
Raw token
HisKA:468:0.000000000000257:533:66:644 HATPase_c#4
582-699 aa · 118 aa · 14.0% of protein
Raw token
HATPase_c:582:1.01e-29:699:118:1095 Response_reg#5
723-840 aa · 118 aa · 14.0% of protein
Raw token
Response_reg:723:3.71e-28:840:118:111- Raw architecture: GAF:29:0.00000286:151:123:133#PAS_3:225:0.0000854:309:86:89#HisKA:468:0.000000000000257:533:66:64#HATPase_c:582:1.01e-29:699:118:109#Response_reg:723:3.71e-28:840:118:111
- Domain description: 1 GAF,1 PAS_3,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013301475::NZ_JAAIOK010000003.1::G00041
Group size11 locus tag listed below.
HK / RR1 / 0Counts resolved for the local TCS neighborhood.
Context span216623-219157Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4393_04125RefSeq proteinWP_173690019.1
Context group ID
GCF_013301475::NZ_JAAIOK010000003.1::G00041Context members
G4393_RS04095
Partner locus tags
G4393_RS04095
Partner old locus tags
G4393_04125
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173690019.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4393_RS04095Primary locus identifier stored in the genes table.
Old locus tagG4393_04125Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOK010000003.1Sequence record reported by the local genomic context database.
Genomic interval216 623-219 157 nt2 535 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span216 623-219 157 ntGCF_013301475::NZ_JAAIOK010000003.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301475::NZ_JAAIOK010000003.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOK010000003.1All displayed genes belong to this local TCS context.
Neighborhood span216 623-219 157 nt2 535 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
216 623 nt219 157 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4393_RS04095GCF_013301475#G4393_RS04095
HKHybridCurrent focus
216 623-219 157 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013299755#G4366_RS03190Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c + Response_reg3 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0502929
Simplified PFAM architecture for HKOC_0502929
PFAM domain coverage: 299 / 844 aa (35.4%)
1 aa844 aa
HisKAHATPase_cResponse_reg
- Simplified architecture: HisKA + HATPase_c + Response_reg
- Raw architecture: HisKA[468-533] | HATPase_c[583-698] | Response_reg[723-839]
- Domain count: 3
- Matched identifier: HKOC_0502929
- Positioned domains: HisKA 468-533 ; HATPase_c 583-698 ; Response_reg 723-839
Cluster members and taxonomy
Representative gene: GCF_013299755#G4366_RS03190
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_013301475
AssemblyASM1330147v1 · Contighaploid
Genome composition3 191 628 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 90 · HK 46 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key