1 Response_reg#1
6-115 aa · 110 aa · 46.8% of protein
Raw token
Response_reg:6:2.29e-35:115:111:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4393_RS01350
Response regulator OmpR family
Coprococcus comes · GCF_013301475
ClassRRTypeOmpRLength235 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013301475#G4393_RS01350Stable P2CS identifier used across views.
GenomeGCF_013301475Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Coprococcus
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length235 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage186 / 235 aa (79.1%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa235 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
156-231 aa · 76 aa · 32.3% of protein
Raw token
Trans_reg_C:156:1.7e-30:231:77:77- Raw architecture: Response_reg:6:2.29e-35:115:111:111#Trans_reg_C:156:1.7e-30:231:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013301475::NZ_JAAIOK010000001.1::G00020
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span299055-301818Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4393_01355RefSeq proteinWP_008375161.1
Context group ID
GCF_013301475::NZ_JAAIOK010000001.1::G00020Context members
G4393_RS01350G4393_RS01355
Partner locus tags
G4393_RS01350G4393_RS01355
Partner old locus tags
G4393_01355G4393_01360
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_008375161.1Primary protein accession used for annex mappings.
UniProt accessionC0BBQ7Primary UniProt accession resolved in the annex database.
UniProt IDC0BBQ7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed5 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4393_RS01350Primary locus identifier stored in the genes table.
Old locus tagG4393_01355Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIOK010000001.1Sequence record reported by the local genomic context database.
Genomic interval299 055-299 762 nt708 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span299 055-301 818 ntGCF_013301475::NZ_JAAIOK010000001.1::G00020
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301475::NZ_JAAIOK010000001.1::G00020Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIOK010000001.1All displayed genes belong to this local TCS context.
Neighborhood span299 055-301 818 nt2 764 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
299 055 nt301 818 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4393_RS01350GCF_013301475#G4393_RS01350
RROmpRCurrent focus
299 055-299 762 nt · Forward (+)
G4393_RS01355GCF_013301475#G4393_RS01355
HKClassic
299 734-301 818 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001404595#AQ998_RS04420Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1020280
Simplified PFAM architecture for RROC_1020280
PFAM domain coverage: 185 / 235 aa (78.7%)
1 aa235 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[6-115] | Trans_reg_C[156-230]
- Domain count: 2
- Matched identifier: RROC_1020280
- Positioned domains: Response_reg 6-115 ; Response_reg 6-115 ; Trans_reg_C 156-230 ; Trans_reg_C 156-230
Cluster members and taxonomy
Representative gene: GCF_001404595#AQ998_RS04420
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 410 072 · GCF_013301475
AssemblyASM1330147v1 · Contighaploid
Genome composition3 191 628 bp · 42,5% GCCoprococcus comes
Signal transduction countsGenes 90 · HK 46 · RR 43CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusCoprococcus
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Coprococcus
Related genes
Preview from the same derived genome key