1 GAF#1
35-175 aa · 141 aa · 19.5% of protein
Raw token
GAF:35:0.00000000173:175:141:133P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4451_RS04820
Histidine kinase, Hybrid
Fusicatenibacter saccharivorans · GCF_013301135
ClassHKTypeHybridLength724 aaTM0ValidatedNoCompleteYesContexttriad
Gene IDGCF_013301135#G4451_RS04820Stable P2CS identifier used across views.
GenomeGCF_013301135Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
GAFHisKAHATPase_cResponse_reg
Protein length724 aaLength used to scale native and Biotite-like views.
Annotated domains44 with usable coordinates.
Domain coverage443 / 724 aa (61.2%)Merged over positioned domains only.
Domain description1 GAF,1 HisKA,1 HATPase_c,1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa724 aa
Domain-by-domain annotation4 items
2 HisKA#2
343-409 aa · 67 aa · 9.3% of protein
Raw token
HisKA:343:0.00000000000000124:409:67:643 HATPase_c#3
458-575 aa · 118 aa · 16.3% of protein
Raw token
HATPase_c:458:1.89e-27:575:118:1094 Response_reg#4
600-716 aa · 117 aa · 16.2% of protein
Raw token
Response_reg:600:2.29e-31:716:117:111- Raw architecture: GAF:35:0.00000000173:175:141:133#HisKA:343:0.00000000000000124:409:67:64#HATPase_c:458:1.89e-27:575:118:109#Response_reg:600:2.29e-31:716:117:111
- Domain description: 1 GAF,1 HisKA,1 HATPase_c,1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labeltriadGCF_013301135::NZ_JAAINX010000005.1::G00041
Group size33 locus tags listed below.
HK / RR3 / 0Counts resolved for the local TCS neighborhood.
Context span60439-68425Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4451_04835RefSeq proteinWP_173841201.1
Context group ID
GCF_013301135::NZ_JAAINX010000005.1::G00041Context members
G4451_RS04810G4451_RS04815G4451_RS04820
Partner locus tags
G4451_RS04810G4451_RS04815G4451_RS04820
Partner old locus tags
G4451_04825G4451_04830G4451_04835
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173841201.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4451_RS04820Primary locus identifier stored in the genes table.
Old locus tagG4451_04835Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAINX010000005.1Sequence record reported by the local genomic context database.
Genomic interval66 251-68 425 nt2 175 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span60 439-68 425 ntGCF_013301135::NZ_JAAINX010000005.1::G00041
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013301135::NZ_JAAINX010000005.1::G00041Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labeltriadNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAINX010000005.1All displayed genes belong to this local TCS context.
Neighborhood span60 439-68 425 nt7 987 nt
Members31 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
60 439 nt68 425 nt
Neighborhood gene cards
3 genes in the current local neighborhood.
G4451_RS04810GCF_013301135#G4451_RS04810
HKHybrid
60 439-63 231 nt · Reverse (-)
G4451_RS04815GCF_013301135#G4451_RS04815
HKHybrid
63 280-66 111 nt · Reverse (-)
G4451_RS04820GCF_013301135#G4451_RS04820
HKHybridCurrent focus
66 251-68 425 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013301135#G4451_RS04820The current gene is the representative for this cluster.
PFAM architectureGAF + HisKA + HATPase_c + Response_reg4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0725326
Simplified PFAM architecture for HKOC_0725326
PFAM domain coverage: 436 / 724 aa (60.2%)
1 aa724 aa
GAFHisKAHATPase_cResponse_reg
- Simplified architecture: GAF + HisKA + HATPase_c + Response_reg
- Raw architecture: GAF[35-171] | HisKA[344-409] | HATPase_c[459-574] | Response_reg[600-716]
- Domain count: 4
- Matched identifier: HKOC_0725326
- Positioned domains: GAF 35-171 ; HisKA 344-409 ; HATPase_c 459-574 ; Response_reg 600-716
Cluster members and taxonomy
Representative gene: GCF_013301135#G4451_RS04820
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_013301135
AssemblyASM1330113v1 · Contighaploid
Genome composition3 904 794 bp · 47,0% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 89 · HK 47 · RR 40CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key