1 Response_reg#1
1-115 aa · 115 aa · 88.5% of protein
Raw token
Response_reg:1:2.51e-26:115:115:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4500_RS07645
Response regulator, CheY family
Fusicatenibacter saccharivorans · GCF_013300975
ClassRRTypeCheYLength130 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013300975#G4500_RS07645Stable P2CS identifier used across views.
GenomeGCF_013300975Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length130 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage115 / 130 aa (88.5%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa130 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:1:2.51e-26:115:115:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013300975::NZ_JAAINQ010000009.1::G00066
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span119593-121787Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4500_07675RefSeq proteinWP_226906372.1
Context group ID
GCF_013300975::NZ_JAAINQ010000009.1::G00066Context members
G4500_RS07645G4500_RS07650
Partner locus tags
G4500_RS07645G4500_RS07650
Partner old locus tags
G4500_07675G4500_07680
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_226906372.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4500_RS07645Primary locus identifier stored in the genes table.
Old locus tagG4500_07675Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAINQ010000009.1Sequence record reported by the local genomic context database.
Genomic interval119 593-119 985 nt393 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span119 593-121 787 ntGCF_013300975::NZ_JAAINQ010000009.1::G00066
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300975::NZ_JAAINQ010000009.1::G00066Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAINQ010000009.1All displayed genes belong to this local TCS context.
Neighborhood span119 593-121 787 nt2 195 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
119 593 nt121 787 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4500_RS07645GCF_013300975#G4500_RS07645
RRCheYCurrent focus
119 593-119 985 nt · Reverse (-)
G4500_RS07650GCF_013300975#G4500_RS07650
HKClassic
120 123-121 787 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300975#G4500_RS07645The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_2324893
Simplified PFAM architecture for RROC_2324893
PFAM domain coverage: 114 / 130 aa (87.7%)
1 aa130 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[1-114]
- Domain count: 1
- Matched identifier: RROC_2324893
- Positioned domains: Response_reg 1-114
Cluster members and taxonomy
Representative gene: GCF_013300975#G4500_RS07645
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_013300975
AssemblyASM1330097v1 · Contighaploid
Genome composition3 643 239 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 106 · HK 52 · RR 50CheA 0 · PP 4
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key