1 Response_reg#1
6-118 aa · 113 aa · 22.3% of protein
Raw token
Response_reg:6:2.94e-30:118:113:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5B24_RS10525
Response regulator, unclassified
Blautia glucerasea · GCF_013300845
ClassRRTypeunclassifiedLength507 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013300845#G5B24_RS10525Stable P2CS identifier used across views.
GenomeGCF_013300845Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length507 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage184 / 507 aa (36.3%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa507 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
411-452 aa · 42 aa · 8.3% of protein
Raw token
HTH_AraC:411:0.000000000197:452:42:423 HTH_AraC#3
472-500 aa · 29 aa · 5.7% of protein
Raw token
HTH_AraC:472:0.00000342:500:29:42- Raw architecture: Response_reg:6:2.94e-30:118:113:111#HTH_AraC:411:0.000000000197:452:42:42#HTH_AraC:472:0.00000342:500:29:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013300845::NZ_JAAIUB010000022.1::G00018
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span59051-62321Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5B24_10520RefSeq proteinWP_173716396.1
Context group ID
GCF_013300845::NZ_JAAIUB010000022.1::G00018Context members
G5B24_RS10525G5B24_RS10530
Partner locus tags
G5B24_RS10525G5B24_RS10530
Partner old locus tags
G5B24_10520G5B24_10525
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173716396.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5B24_RS10525Primary locus identifier stored in the genes table.
Old locus tagG5B24_10520Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIUB010000022.1Sequence record reported by the local genomic context database.
Genomic interval59 051-60 574 nt1 524 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span59 051-62 321 ntGCF_013300845::NZ_JAAIUB010000022.1::G00018
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300845::NZ_JAAIUB010000022.1::G00018Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIUB010000022.1All displayed genes belong to this local TCS context.
Neighborhood span59 051-62 321 nt3 271 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
59 051 nt62 321 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G5B24_RS10525GCF_013300845#G5B24_RS10525
RRunclassifiedCurrent focus
59 051-60 574 nt · Reverse (-)
G5B24_RS10530GCF_013300845#G5B24_RS10530
HKClassic
60 564-62 321 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300155#G4470_RS08225Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0150386
Simplified PFAM architecture for RROC_0150386
PFAM domain coverage: 192 / 507 aa (37.9%)
1 aa507 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[6-118] | HTH_18[424-502]
- Domain count: 2
- Matched identifier: RROC_0150386
- Positioned domains: Response_reg 6-118 ; HTH_18 424-502
Cluster members and taxonomy
Representative gene: GCF_013300155#G4470_RS08225
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 536 633 · GCF_013300845
AssemblyASM1330084v1 · Contigreference genome · haploid
Genome composition4 398 197 bp · 42,5% GCBlautia glucerasea
Signal transduction countsGenes 130 · HK 65 · RR 64CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key