1 Response_reg#1
5-113 aa · 109 aa · 42.1% of protein
Raw token
Response_reg:5:1.96e-23:113:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5B24_RS09190
Response regulator, unclassified
Blautia glucerasea · GCF_013300845
ClassRRTypeunclassifiedLength259 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013300845#G5B24_RS09190Stable P2CS identifier used across views.
GenomeGCF_013300845Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length259 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage189 / 259 aa (73.0%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa259 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
163-203 aa · 41 aa · 15.8% of protein
Raw token
HTH_AraC:163:0.000000233:203:41:423 HTH_AraC#3
215-253 aa · 39 aa · 15.1% of protein
Raw token
HTH_AraC:215:0.0000000129:253:39:42- Raw architecture: Response_reg:5:1.96e-23:113:109:111#HTH_AraC:163:0.000000233:203:41:42#HTH_AraC:215:0.0000000129:253:39:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013300845::NZ_JAAIUB010000018.1::G00010
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span54670-57333Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5B24_09185RefSeq proteinWP_173718640.1
Context group ID
GCF_013300845::NZ_JAAIUB010000018.1::G00010Context members
G5B24_RS09185G5B24_RS09190
Partner locus tags
G5B24_RS09185G5B24_RS09190
Partner old locus tags
G5B24_09180G5B24_09185
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173718640.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5B24_RS09190Primary locus identifier stored in the genes table.
Old locus tagG5B24_09185Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIUB010000018.1Sequence record reported by the local genomic context database.
Genomic interval56 554-57 333 nt780 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span54 670-57 333 ntGCF_013300845::NZ_JAAIUB010000018.1::G00010
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300845::NZ_JAAIUB010000018.1::G00010Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIUB010000018.1All displayed genes belong to this local TCS context.
Neighborhood span54 670-57 333 nt2 664 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
54 670 nt57 333 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G5B24_RS09185GCF_013300845#G5B24_RS09185
HKClassic
54 670-56 511 nt · Forward (+)
G5B24_RS09190GCF_013300845#G5B24_RS09190
RRunclassifiedCurrent focus
56 554-57 333 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300845#G5B24_RS09190The current gene is the representative for this cluster.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0659135
Simplified PFAM architecture for RROC_0659135
PFAM domain coverage: 189 / 259 aa (73.0%)
1 aa259 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[5-114] | HTH_18[175-253]
- Domain count: 2
- Matched identifier: RROC_0659135
- Positioned domains: Response_reg 5-114 ; HTH_18 175-253
Cluster members and taxonomy
Representative gene: GCF_013300845#G5B24_RS09190
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 536 633 · GCF_013300845
AssemblyASM1330084v1 · Contigreference genome · haploid
Genome composition4 398 197 bp · 42,5% GCBlautia glucerasea
Signal transduction countsGenes 130 · HK 65 · RR 64CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key