1 Response_reg#1
6-119 aa · 114 aa · 20.8% of protein
Raw token
Response_reg:6:1.06e-26:119:114:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5B24_RS02990
Response regulator, unclassified
Blautia glucerasea · GCF_013300845
ClassRRTypeunclassifiedLength548 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013300845#G5B24_RS02990Stable P2CS identifier used across views.
GenomeGCF_013300845Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Blautia
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length548 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage192 / 548 aa (35.0%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa548 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
454-494 aa · 41 aa · 7.5% of protein
Raw token
HTH_AraC:454:0.0000000572:494:41:423 HTH_AraC#3
509-545 aa · 37 aa · 6.8% of protein
Raw token
HTH_AraC:509:0.00000633:545:37:42- Raw architecture: Response_reg:6:1.06e-26:119:114:111#HTH_AraC:454:0.0000000572:494:41:42#HTH_AraC:509:0.00000633:545:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013300845::NZ_JAAIUB010000005.1::G00057
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span38661-41364Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5B24_02980RefSeq proteinWP_173715745.1
Context group ID
GCF_013300845::NZ_JAAIUB010000005.1::G00057Context members
G5B24_RS02990G5B24_RS02995
Partner locus tags
G5B24_RS02990G5B24_RS02995
Partner old locus tags
G5B24_02980G5B24_02985
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_173715745.1Primary protein accession used for annex mappings.
UniProt accessionA0ABX2H975Primary UniProt accession resolved in the annex database.
UniProt IDA0ABX2H975_9FIRMDisplay identifier provided by UniProt.
GO / PubMed0 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5B24_RS02990Primary locus identifier stored in the genes table.
Old locus tagG5B24_02980Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAIUB010000005.1Sequence record reported by the local genomic context database.
Genomic interval38 661-40 307 nt1 647 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span38 661-41 364 ntGCF_013300845::NZ_JAAIUB010000005.1::G00057
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300845::NZ_JAAIUB010000005.1::G00057Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAIUB010000005.1All displayed genes belong to this local TCS context.
Neighborhood span38 661-41 364 nt2 704 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
38 661 nt41 364 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G5B24_RS02990GCF_013300845#G5B24_RS02990
RRunclassifiedCurrent focus
38 661-40 307 nt · Forward (+)
G5B24_RS02995GCF_013300845#G5B24_RS02995
HKClassic
40 315-41 364 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_015561345#I2041_RS11910Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0057631
Simplified PFAM architecture for RROC_0057631
PFAM domain coverage: 191 / 563 aa (33.9%)
1 aa563 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[21-133] | HTH_18[483-560]
- Domain count: 2
- Matched identifier: RROC_0057631
- Positioned domains: Response_reg 21-133 ; HTH_18 483-560
Cluster members and taxonomy
Representative gene: GCF_015561345#I2041_RS11910
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 536 633 · GCF_013300845
AssemblyASM1330084v1 · Contigreference genome · haploid
Genome composition4 398 197 bp · 42,5% GCBlautia glucerasea
Signal transduction countsGenes 130 · HK 65 · RR 64CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusBlautia
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Blautia
Related genes
Preview from the same derived genome key