1 Response_reg#1
3-105 aa · 103 aa · 19.6% of protein
Raw token
Response_reg:3:8.12e-24:105:103:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5A93_RS08405
Response regulator, unclassified
Fusicatenibacter saccharivorans · GCF_013300755
ClassRRTypeunclassifiedLength525 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013300755#G5A93_RS08405Stable P2CS identifier used across views.
GenomeGCF_013300755Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length525 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage181 / 525 aa (34.5%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa525 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
431-471 aa · 41 aa · 7.8% of protein
Raw token
HTH_AraC:431:0.00000000181:471:41:423 HTH_AraC#3
486-522 aa · 37 aa · 7.0% of protein
Raw token
HTH_AraC:486:0.0000000836:522:37:42- Raw architecture: Response_reg:3:8.12e-24:105:103:111#HTH_AraC:431:0.00000000181:471:41:42#HTH_AraC:486:0.0000000836:522:37:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013300755::NZ_JAAITZ010000008.1::G00056
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span138061-141366Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5A93_08430RefSeq proteinWP_118742283.1
Context group ID
GCF_013300755::NZ_JAAITZ010000008.1::G00056Context members
G5A93_RS08400G5A93_RS08405
Partner locus tags
G5A93_RS08400G5A93_RS08405
Partner old locus tags
G5A93_08425G5A93_08430
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_118742283.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5A93_RS08405Primary locus identifier stored in the genes table.
Old locus tagG5A93_08430Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAITZ010000008.1Sequence record reported by the local genomic context database.
Genomic interval139 789-141 366 nt1 578 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span138 061-141 366 ntGCF_013300755::NZ_JAAITZ010000008.1::G00056
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300755::NZ_JAAITZ010000008.1::G00056Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAITZ010000008.1All displayed genes belong to this local TCS context.
Neighborhood span138 061-141 366 nt3 306 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
138 061 nt141 366 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G5A93_RS08400GCF_013300755#G5A93_RS08400
HKClassic
138 061-139 767 nt · Forward (+)
G5A93_RS08405GCF_013300755#G5A93_RS08405
RRunclassifiedCurrent focus
139 789-141 366 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003480245#DW915_RS13680Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0119329
Simplified PFAM architecture for RROC_0119329
PFAM domain coverage: 186 / 525 aa (35.4%)
1 aa525 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-109] | HTH_18[444-522]
- Domain count: 2
- Matched identifier: RROC_0119329
- Positioned domains: Response_reg 3-109 ; Response_reg 3-109 ; HTH_18 444-522 ; HTH_18 444-522
Cluster members and taxonomy
Representative gene: GCF_003480245#DW915_RS13680
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_013300755
AssemblyASM1330075v1 · Contighaploid
Genome composition3 545 801 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 96 · HK 49 · RR 45CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key