1 KdpD#1
23-232 aa · 210 aa · 23.4% of protein
Raw token
KdpD:23:4.96e-139:232:210:210P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5A93_RS01700
Histidine kinase, Classic
Fusicatenibacter saccharivorans · GCF_013300755
ClassHKTypeClassicLength897 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013300755#G5A93_RS01700Stable P2CS identifier used across views.
GenomeGCF_013300755Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
KdpDHisKAHATPase_c
Protein length897 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage390 / 897 aa (43.5%)Merged over positioned domains only.
Domain description1 KdpD,1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa897 aa
Domain-by-domain annotation3 items
2 HisKA#2
669-736 aa · 68 aa · 7.6% of protein
Raw token
HisKA:669:0.00000000000656:736:68:643 HATPase_c#3
781-892 aa · 112 aa · 12.5% of protein
Raw token
HATPase_c:781:1.83e-31:892:112:109- Raw architecture: KdpD:23:4.96e-139:232:210:210#HisKA:669:0.00000000000656:736:68:64#HATPase_c:781:1.83e-31:892:112:109
- Domain description: 1 KdpD,1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013300755::NZ_JAAITZ010000001.1::G00025
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span375025-378412Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5A93_01720RefSeq proteinWP_173826923.1
Context group ID
GCF_013300755::NZ_JAAITZ010000001.1::G00025Context members
G5A93_RS01695G5A93_RS01700
Partner locus tags
G5A93_RS01695G5A93_RS01700
Partner old locus tags
G5A93_01715G5A93_01720
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173826923.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5A93_RS01700Primary locus identifier stored in the genes table.
Old locus tagG5A93_01720Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAITZ010000001.1Sequence record reported by the local genomic context database.
Genomic interval375 719-378 412 nt2 694 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span375 025-378 412 ntGCF_013300755::NZ_JAAITZ010000001.1::G00025
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300755::NZ_JAAITZ010000001.1::G00025Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAITZ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span375 025-378 412 nt3 388 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
375 025 nt378 412 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G5A93_RS01695GCF_013300755#G5A93_RS01695
RROmpR
375 025-375 726 nt · Reverse (-)
G5A93_RS01700GCF_013300755#G5A93_RS01700
HKClassicCurrent focus
375 719-378 412 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300205#G5A95_RS00040Use this link to inspect the representative gene detail.
PFAM architectureKdpD + DUF4118 + HisKA + HATPase_c4 domains in the representative PFAM annotation.
PFAM architecture for HKOC_0411385
Simplified PFAM architecture for HKOC_0411385
PFAM domain coverage: 494 / 897 aa (55.1%)
1 aa897 aa
KdpDDUF4118HisKAHATPase_c
- Simplified architecture: KdpD + DUF4118 + HisKA + HATPase_c
- Raw architecture: KdpD[24-232] | DUF4118[401-507] | HisKA[669-736] | HATPase_c[781-890]
- Domain count: 4
- Matched identifier: HKOC_0411385
- Positioned domains: KdpD 24-232 ; DUF4118 401-507 ; HisKA 669-736 ; HATPase_c 781-890
Cluster members and taxonomy
Representative gene: GCF_013300205#G5A95_RS00040
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_013300755
AssemblyASM1330075v1 · Contighaploid
Genome composition3 545 801 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 96 · HK 49 · RR 45CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key