1 Response_reg#1
4-112 aa · 109 aa · 48.4% of protein
Raw token
Response_reg:4:2.2e-28:112:110:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G5A93_RS01760
Response regulator OmpR family
Fusicatenibacter saccharivorans · GCF_013300755
ClassRRTypeOmpRLength225 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013300755#G5A93_RS01760Stable P2CS identifier used across views.
GenomeGCF_013300755Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Fusicatenibacter
Domain signature
Compact overview inferred from the domain field
Response_regTrans_reg_C
Protein length225 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage185 / 225 aa (82.2%)Merged over positioned domains only.
Domain description1 Response_reg,1 Trans_reg_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa225 aa
Domain-by-domain annotation2 items
2 Trans_reg_C#2
144-219 aa · 76 aa · 33.8% of protein
Raw token
Trans_reg_C:144:0.000000000000318:219:77:77- Raw architecture: Response_reg:4:2.2e-28:112:110:111#Trans_reg_C:144:0.000000000000318:219:77:77
- Domain description: 1 Response_reg,1 Trans_reg_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013300755::NZ_JAAITZ010000001.1::G00026
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span388502-389179Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG5A93_01780RefSeq proteinWP_173827235.1
Context group ID
GCF_013300755::NZ_JAAITZ010000001.1::G00026Context members
G5A93_RS01760
Partner locus tags
G5A93_RS01760
Partner old locus tags
G5A93_01780
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173827235.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG5A93_RS01760Primary locus identifier stored in the genes table.
Old locus tagG5A93_01780Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAITZ010000001.1Sequence record reported by the local genomic context database.
Genomic interval388 502-389 179 nt678 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span388 502-389 179 ntGCF_013300755::NZ_JAAITZ010000001.1::G00026
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300755::NZ_JAAITZ010000001.1::G00026Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAITZ010000001.1All displayed genes belong to this local TCS context.
Neighborhood span388 502-389 179 nt678 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
388 502 nt389 179 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G5A93_RS01760GCF_013300755#G5A93_RS01760
RROmpRCurrent focus
388 502-389 179 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300205#G5A95_RS05745Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1488343
Simplified PFAM architecture for RROC_1488343
PFAM domain coverage: 184 / 225 aa (81.8%)
1 aa225 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-112] | Trans_reg_C[145-219]
- Domain count: 2
- Matched identifier: RROC_1488343
- Positioned domains: Response_reg 4-112 ; Trans_reg_C 145-219
Cluster members and taxonomy
Representative gene: GCF_013300205#G5A95_RS05745
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 1 150 298 · GCF_013300755
AssemblyASM1330075v1 · Contighaploid
Genome composition3 545 801 bp · 47,5% GCFusicatenibacter saccharivorans
Signal transduction countsGenes 96 · HK 49 · RR 45CheA 0 · PP 2
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusFusicatenibacter
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Fusicatenibacter
Related genes
Preview from the same derived genome key