1 Response_reg#1
6-114 aa · 109 aa · 50.7% of protein
Raw token
Response_reg:6:2.93e-26:114:109:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4352_RS16610
Response regulator, unclassified
Dorea longicatena · GCF_013300365
ClassRRTypeunclassifiedLength215 aaTM0ValidatedNoCompleteYesContextNo local context
Gene IDGCF_013300365#G4352_RS16610Stable P2CS identifier used across views.
GenomeGCF_013300365Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
External referencesMIST4 G4352_RS16610MIST4
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length215 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage109 / 215 aa (50.7%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa215 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:6:2.93e-26:114:109:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
No local TCS context mapping is available for this gene.
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No external UniProt / GO / PubMed mapping is available for this gene.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4352_RS16610Primary locus identifier stored in the genes table.
Old locus tagUnavailableNo previous locus tag available for this gene.
Contig / repliconUnavailableNo contig or replicon mapping is available for this gene.
Genomic intervalUnavailableNo start/end genomic coordinates are available for this gene.
StrandUnavailableStrand sign follows the local context database convention.
Local TCS group spanUnavailableNo grouped neighborhood span is available for this gene.
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
No local TCS neighborhood is available for this gene on this server.
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_013300365#G4352_RS16610The current gene is the representative for this cluster.
PFAM architectureResponse_reg1 domain in the representative PFAM annotation.
PFAM architecture for RROC_1916948
Simplified PFAM architecture for RROC_1916948
PFAM domain coverage: 113 / 215 aa (52.6%)
1 aa215 aa
Response_reg
- Simplified architecture: Response_reg
- Raw architecture: Response_reg[6-118]
- Domain count: 1
- Matched identifier: RROC_1916948
- Positioned domains: Response_reg 6-118
Cluster members and taxonomy
Representative gene: GCF_013300365#G4352_RS16610
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_013300365
AssemblyASM1330036v1 · Contighaploid
Genome composition3 342 606 bp · 41,0% GCDorea longicatena
Signal transduction countsGenes 90 · HK 44 · RR 45CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key