1 Response_reg#1
3-120 aa · 118 aa · 23.0% of protein
Raw token
Response_reg:3:1.36e-23:120:118:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4352_RS16525
Response regulator, unclassified
Dorea longicatena · GCF_013300365
ClassRRTypeunclassifiedLength514 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013300365#G4352_RS16525Stable P2CS identifier used across views.
GenomeGCF_013300365Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regHTH_AraC
Protein length514 aaLength used to scale native and Biotite-like views.
Annotated domains33 with usable coordinates.
Domain coverage199 / 514 aa (38.7%)Merged over positioned domains only.
Domain description1 Response_reg,2 HTH_AraCSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa514 aa
Domain-by-domain annotation3 items
2 HTH_AraC#2
420-461 aa · 42 aa · 8.2% of protein
Raw token
HTH_AraC:420:0.00000000138:461:42:423 HTH_AraC#3
473-511 aa · 39 aa · 7.6% of protein
Raw token
HTH_AraC:473:0.00000000296:511:39:42- Raw architecture: Response_reg:3:1.36e-23:120:118:111#HTH_AraC:420:0.00000000138:461:42:42#HTH_AraC:473:0.00000000296:511:39:42
- Domain description: 1 Response_reg,2 HTH_AraC
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013300365::NZ_JAAILM010000006.1::G00038
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span27938-29482Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4352_06740RefSeq proteinWP_044919657.1
Context group ID
GCF_013300365::NZ_JAAILM010000006.1::G00038Context members
G4352_RS16525
Partner locus tags
G4352_RS16525
Partner old locus tags
G4352_06740
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_044919657.1Primary protein accession used for annex mappings.
UniProt accessionA0A173SGV6Primary UniProt accession resolved in the annex database.
UniProt IDA0A173SGV6_9FIRMDisplay identifier provided by UniProt.
GO / PubMed3 / 0Unique GO terms and literature references available below.
Reference hubs
GO terms
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4352_RS16525Primary locus identifier stored in the genes table.
Old locus tagG4352_06740Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAILM010000006.1Sequence record reported by the local genomic context database.
Genomic interval27 938-29 482 nt1 545 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span27 938-29 482 ntGCF_013300365::NZ_JAAILM010000006.1::G00038
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300365::NZ_JAAILM010000006.1::G00038Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAILM010000006.1All displayed genes belong to this local TCS context.
Neighborhood span27 938-29 482 nt1 545 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
27 938 nt29 482 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4352_RS16525GCF_013300365#G4352_RS16525
RRunclassifiedCurrent focus
27 938-29 482 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000154065#DORLON_RS03980Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + HTH_182 domains in the representative PFAM annotation.
PFAM architecture for RROC_0138241
Simplified PFAM architecture for RROC_0138241
PFAM domain coverage: 194 / 514 aa (37.7%)
1 aa514 aa
Response_regHTH_18
- Simplified architecture: Response_reg + HTH_18
- Raw architecture: Response_reg[3-117] | HTH_18[433-511]
- Domain count: 2
- Matched identifier: RROC_0138241
- Positioned domains: Response_reg 3-117 ; Response_reg 3-117 ; HTH_18 433-511 ; HTH_18 433-511
Cluster members and taxonomy
Representative gene: GCF_000154065#DORLON_RS03980
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_013300365
AssemblyASM1330036v1 · Contighaploid
Genome composition3 342 606 bp · 41,0% GCDorea longicatena
Signal transduction countsGenes 90 · HK 44 · RR 45CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key