1 Response_reg#1
4-109 aa · 106 aa · 97.2% of protein
Raw token
Response_reg:4:3.96e-31:109:106:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4352_RS16005
Response regulator, CheY family
Dorea longicatena · GCF_013300365
ClassRRTypeCheYLength109 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013300365#G4352_RS16005Stable P2CS identifier used across views.
GenomeGCF_013300365Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_reg
Protein length109 aaLength used to scale native and Biotite-like views.
Annotated domains11 with usable coordinates.
Domain coverage106 / 109 aa (97.2%)Merged over positioned domains only.
Domain description1 Response_regSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa109 aa
Domain-by-domain annotation1 item
- Raw architecture: Response_reg:4:3.96e-31:109:106:111
- Domain description: 1 Response_reg
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013300365::NZ_JAAILM010000072.1::G00044
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span1-328Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4352_16065RefSeq proteinWP_173792724.1
Context group ID
GCF_013300365::NZ_JAAILM010000072.1::G00044Context members
G4352_RS16005
Partner locus tags
G4352_RS16005
Partner old locus tags
G4352_16065
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_173792724.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4352_RS16005Primary locus identifier stored in the genes table.
Old locus tagG4352_16065Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAILM010000072.1Sequence record reported by the local genomic context database.
Genomic interval1-328 nt328 nt · Reverse (-)
StrandReverse (-)Strand sign follows the local context database convention.
Local TCS group span1-328 ntGCF_013300365::NZ_JAAILM010000072.1::G00044
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300365::NZ_JAAILM010000072.1::G00044Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAILM010000072.1All displayed genes belong to this local TCS context.
Neighborhood span1-328 nt328 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
1 nt328 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4352_RS16005GCF_013300365#G4352_RS16005
RRCheYCurrent focus
1-328 nt · Reverse (-)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_000162015#FAEPRAA2165_RS09490Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Trans_reg_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_1200269
Simplified PFAM architecture for RROC_1200269
PFAM domain coverage: 186 / 230 aa (80.9%)
1 aa230 aa
Response_regTrans_reg_C
- Simplified architecture: Response_reg + Trans_reg_C
- Raw architecture: Response_reg[4-113] | Trans_reg_C[148-223]
- Domain count: 2
- Matched identifier: RROC_1200269
- Positioned domains: Response_reg 4-113 ; Response_reg 4-113 ; Trans_reg_C 148-223 ; Trans_reg_C 148-223
Cluster members and taxonomy
Representative gene: GCF_000162015#FAEPRAA2165_RS09490
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_013300365
AssemblyASM1330036v1 · Contighaploid
Genome composition3 342 606 bp · 41,0% GCDorea longicatena
Signal transduction countsGenes 90 · HK 44 · RR 45CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key