1 Response_reg#1
6-121 aa · 116 aa · 44.3% of protein
Raw token
Response_reg:6:3.52e-20:121:116:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4352_RS07935
Response regulator Spo0A family
Dorea longicatena · GCF_013300365
ClassRRTypeSpo0ALength262 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013300365#G4352_RS07935Stable P2CS identifier used across views.
GenomeGCF_013300365Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regSpo0A_C
Protein length262 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage220 / 262 aa (84.0%)Merged over positioned domains only.
Domain description1 Response_reg,1 Spo0A_CSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa262 aa
Domain-by-domain annotation2 items
2 Spo0A_C#2
152-255 aa · 104 aa · 39.7% of protein
Raw token
Spo0A_C:152:1.72e-64:255:104:104- Raw architecture: Response_reg:6:3.52e-20:121:116:111#Spo0A_C:152:1.72e-64:255:104:104
- Domain description: 1 Response_reg,1 Spo0A_C
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013300365::NZ_JAAILM010000007.1::G00046
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span87805-88593Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4352_07955RefSeq proteinWP_022415516.1
Context group ID
GCF_013300365::NZ_JAAILM010000007.1::G00046Context members
G4352_RS07935
Partner locus tags
G4352_RS07935
Partner old locus tags
G4352_07955
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_022415516.1Primary protein accession used for annex mappings.
UniProt accessionA0A173TAA7Primary UniProt accession resolved in the annex database.
UniProt IDA0A173TAA7_9FIRMDisplay identifier provided by UniProt.
GO / PubMed8 / 1Unique GO terms and literature references available below.
Reference hubs
PubMed
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4352_RS07935Primary locus identifier stored in the genes table.
Old locus tagG4352_07955Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAILM010000007.1Sequence record reported by the local genomic context database.
Genomic interval87 805-88 593 nt789 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span87 805-88 593 ntGCF_013300365::NZ_JAAILM010000007.1::G00046
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300365::NZ_JAAILM010000007.1::G00046Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAILM010000007.1All displayed genes belong to this local TCS context.
Neighborhood span87 805-88 593 nt789 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
87 805 nt88 593 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4352_RS07935GCF_013300365#G4352_RS07935
RRSpo0ACurrent focus
87 805-88 593 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405135#ARC33_RS11070Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + Spo0A_C2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0644588
Simplified PFAM architecture for RROC_0644588
PFAM domain coverage: 219 / 262 aa (83.6%)
1 aa262 aa
Response_regSpo0A_C
- Simplified architecture: Response_reg + Spo0A_C
- Raw architecture: Response_reg[6-120] | Spo0A_C[152-255]
- Domain count: 2
- Matched identifier: RROC_0644588
- Positioned domains: Response_reg 6-120 ; Response_reg 6-120 ; Spo0A_C 152-255 ; Spo0A_C 152-255
Cluster members and taxonomy
Representative gene: GCF_001405135#ARC33_RS11070
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_013300365
AssemblyASM1330036v1 · Contighaploid
Genome composition3 342 606 bp · 41,0% GCDorea longicatena
Signal transduction countsGenes 90 · HK 44 · RR 45CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key