1 Response_reg#1
7-103 aa · 97 aa · 41.1% of protein
Raw token
Response_reg:7:7.13e-18:103:104:111P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4352_RS06880
Response regulator LytTR family
Dorea longicatena · GCF_013300365
ClassRRTypeLytTRLength236 aaTM0ValidatedNoCompleteYesContextorphan
Gene IDGCF_013300365#G4352_RS06880Stable P2CS identifier used across views.
GenomeGCF_013300365Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
Response_regLytTR
Protein length236 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage183 / 236 aa (77.5%)Merged over positioned domains only.
Domain description1 Response_reg,1 LytTRSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa236 aa
Domain-by-domain annotation2 items
2 LytTR#2
143-228 aa · 86 aa · 36.4% of protein
Raw token
LytTR:143:0.0000000000184:228:91:98- Raw architecture: Response_reg:7:7.13e-18:103:104:111#LytTR:143:0.0000000000184:228:91:98
- Domain description: 1 Response_reg,1 LytTR
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelorphanGCF_013300365::NZ_JAAILM010000006.1::G00039
Group size11 locus tag listed below.
HK / RR0 / 1Counts resolved for the local TCS neighborhood.
Context span55888-56598Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4352_06895RefSeq proteinWP_117537020.1
Context group ID
GCF_013300365::NZ_JAAILM010000006.1::G00039Context members
G4352_RS06880
Partner locus tags
G4352_RS06880
Partner old locus tags
G4352_06895
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
No UniProt / GO / PubMed mapping was found for WP_117537020.1.
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4352_RS06880Primary locus identifier stored in the genes table.
Old locus tagG4352_06895Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAILM010000006.1Sequence record reported by the local genomic context database.
Genomic interval55 888-56 598 nt711 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span55 888-56 598 ntGCF_013300365::NZ_JAAILM010000006.1::G00039
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300365::NZ_JAAILM010000006.1::G00039Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelorphanNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAILM010000006.1All displayed genes belong to this local TCS context.
Neighborhood span55 888-56 598 nt711 nt
Members11 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
55 888 nt56 598 nt
Neighborhood gene cards
1 gene in the current local neighborhood.
G4352_RS06880GCF_013300365#G4352_RS06880
RRLytTRCurrent focus
55 888-56 598 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_003435815#DW125_RS02580Use this link to inspect the representative gene detail.
PFAM architectureResponse_reg + LytTR2 domains in the representative PFAM annotation.
PFAM architecture for RROC_0995536
Simplified PFAM architecture for RROC_0995536
PFAM domain coverage: 197 / 236 aa (83.5%)
1 aa236 aa
Response_regLytTR
- Simplified architecture: Response_reg + LytTR
- Raw architecture: Response_reg[5-110] | LytTR[138-228]
- Domain count: 2
- Matched identifier: RROC_0995536
- Positioned domains: Response_reg 5-110 ; Response_reg 5-110 ; LytTR 138-228 ; LytTR 138-228
Cluster members and taxonomy
Representative gene: GCF_003435815#DW125_RS02580
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_013300365
AssemblyASM1330036v1 · Contighaploid
Genome composition3 342 606 bp · 41,0% GCDorea longicatena
Signal transduction countsGenes 90 · HK 44 · RR 45CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key