1 HisKA#1
197-260 aa · 64 aa · 15.2% of protein
Raw token
HisKA:197:0.0000000594:260:64:64P2CS-Web
Two-component systems, rebuilt for exploration
Gene detail
G4352_RS05050
Histidine kinase, Classic
Dorea longicatena · GCF_013300365
ClassHKTypeClassicLength421 aaTM0ValidatedNoCompleteYesContextpaired
Gene IDGCF_013300365#G4352_RS05050Stable P2CS identifier used across views.
GenomeGCF_013300365Bacteria; Bacillati; Bacillota; Clostridia; Lachnospirales; Lachnospiraceae; Dorea
Domain signature
Compact overview inferred from the domain field
HisKAHATPase_c
Protein length421 aaLength used to scale native and Biotite-like views.
Annotated domains22 with usable coordinates.
Domain coverage174 / 421 aa (41.3%)Merged over positioned domains only.
Domain description1 HisKA,1 HATPase_cSummary string stored in the genes table.
Signal peptideUnavailableNo TMPRED prediction file matched this gene.
Transmembrane helicesUnavailableConfigure [protein_features] tmpred_root_dir to enable this annotation.
Complete domain annotations
Native P2CS viewFrontend rendering from the parsed domain string and TMPRED protein features.
1 aa421 aa
Domain-by-domain annotation2 items
2 HATPase_c#2
309-418 aa · 110 aa · 26.1% of protein
Raw token
HATPase_c:309:6.71e-31:418:110:109- Raw architecture: HisKA:197:0.0000000594:260:64:64#HATPase_c:309:6.71e-31:418:110:109
- Domain description: 1 HisKA,1 HATPase_c
- TM description: N/A
- TMPRED source: No TMPRED file loaded
- TMPRED segments: N/A
- Complete: Yes
Context mapping
Resolved via p2cs_tcs_context.db when a locus tag match exists
Context labelpairedGCF_013300365::NZ_JAAILM010000004.1::G00033
Group size22 locus tags listed below.
HK / RR1 / 1Counts resolved for the local TCS neighborhood.
Context span11100-13030Genomic interval covered by the local TCS group.
Identifiers
Old locus tagG4352_05060RefSeq proteinWP_055213724.1
Context group ID
GCF_013300365::NZ_JAAILM010000004.1::G00033Context members
G4352_RS05045G4352_RS05050
Partner locus tags
G4352_RS05045G4352_RS05050
Partner old locus tags
G4352_05055G4352_05060
Partner protein IDs
External references
Resolved via p2cs_annexes.db when the RefSeq protein is present in the annex table
RefSeqWP_055213724.1Primary protein accession used for annex mappings.
UniProt accessionA0A173S344Primary UniProt accession resolved in the annex database.
UniProt IDA0A173S344_9FIRMDisplay identifier provided by UniProt.
GO / PubMed4 / 0Unique GO terms and literature references available below.
Reference hubs
Genomic coordinates
Resolved via p2cs_tcs_context.db when the current locus tag is present in the local context table
Current locus tagG4352_RS05050Primary locus identifier stored in the genes table.
Old locus tagG4352_05060Legacy locus tag recovered from the local context mapping.
Contig / repliconNZ_JAAILM010000004.1Sequence record reported by the local genomic context database.
Genomic interval11 765-13 030 nt1 266 nt · Forward (+)
StrandForward (+)Strand sign follows the local context database convention.
Local TCS group span11 100-13 030 ntGCF_013300365::NZ_JAAILM010000004.1::G00033
Quick actions
Local neighborhood
Graphical neighborhood resolved from the local TCS context group on the current contig
GCF_013300365::NZ_JAAILM010000004.1::G00033Graphic view
Compact keeps a quick overview. Biotite-like switches to a coordinate-aware biological layout with strand and zoom.
Context labelpairedNeighborhood members are ordered by genomic coordinates.
Contig / repliconNZ_JAAILM010000004.1All displayed genes belong to this local TCS context.
Neighborhood span11 100-13 030 nt1 931 nt
Members21 current focus gene
Local TCS group mapArrow direction follows strand. The current gene is highlighted with a stronger outline.
11 100 nt13 030 nt
Neighborhood gene cards
2 genes in the current local neighborhood.
G4352_RS05045GCF_013300365#G4352_RS05045
RROmpR
11 100-11 789 nt · Forward (+)
G4352_RS05050GCF_013300365#G4352_RS05050
HKClassicCurrent focus
11 765-13 030 nt · Forward (+)
Clusters
CD-HIT memberships and selected cluster details for the current gene class
Available memberships1 cluster
Representative sequenceGCF_001405975#AQ988_RS04000Use this link to inspect the representative gene detail.
PFAM architectureHisKA + HATPase_c2 domains in the representative PFAM annotation.
PFAM architecture for HKOC_2257450
Simplified PFAM architecture for HKOC_2257450
PFAM domain coverage: 176 / 421 aa (41.8%)
1 aa421 aa
HisKAHATPase_c
- Simplified architecture: HisKA + HATPase_c
- Raw architecture: HisKA[196-260] | HATPase_c[309-419]
- Domain count: 2
- Matched identifier: HKOC_2257450
- Positioned domains: HisKA 196-260 ; HATPase_c 309-419
Cluster members and taxonomy
Representative gene: GCF_001405975#AQ988_RS04000
Sankey plot built from the taxonomy of all members in the selected cluster.
Genome taxonomy
Unknown
Taxonomy recordUnknownTaxon ID 88 431 · GCF_013300365
AssemblyASM1330036v1 · Contighaploid
Genome composition3 342 606 bp · 41,0% GCDorea longicatena
Signal transduction countsGenes 90 · HK 44 · RR 45CheA 0 · PP 1
Ranked taxonomy7 ranked levels available
SuperkingdomBacteriaKingdomBacillatiPhylumBacillotaClassClostridiaOrderLachnospiralesFamilyLachnospiraceaeGenusDorea
Lineage path7 lineage nodes
1Bacteria2Bacillati3Bacillota4Clostridia5Lachnospirales6Lachnospiraceae7Dorea
Related genes
Preview from the same derived genome key